| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2024 |
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| Symbol | |
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| ID | 5539502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2596402 |
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| End bp | 2597874 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640894159 |
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| Product | protoporphyrinogen oxidase |
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| Protein accession | YP_001432130 |
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| Protein GI | 156742001 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1232] Protoporphyrinogen oxidase |
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| TIGRFAM ID | [TIGR00562] protoporphyrinogen oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.364182 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGA TGCATTCGAC ATCGGCGGCA ACGCTGTTCC CGGGCGGTCA ACCGCACATC
GTTGTGGTAG GCGGCGGGAT CAGCGGCATG AGCGCGGCAT ATGAACTGGG GCGCGCAACG
CGCGACGGGG CGCCGCCGGT GATGGTCACG CTCATCGAGC GTGAGGCGCG TTTAGGGGGC
AAGGTCGTCA CCGAGCGCAA CGGACCCTTC GTCATCGAAG GCGGACCCGA CTCGTTCATG
GCGCAGAAAC CATGGGCTGC CGAACTGGCG CGTGAGATCG GTCTGGGTGA CGAGTTGATG
GTCGCCTCGC CGATGCGCCG CACGACATGG GTGCTGATCC GTGGACGACC GCAACCGCTC
CCCGAAGGCA TGCTCCTGAT CGTCCCCACA CGCATCGCAC CCTTTGCCTT CTCGCCGCTG
ATTTCTCCCC TTGGAAAACT TCGTATGGCG CTCGACTTGT TCGTTCCGGC GCGCCGTGAC
GATGGCGATG AGACGCTCGC CGACTTTATT CGCCGTCGCC TGGGGAATGA GGCGCTTGAT
CGTCTGGCGG AGCCGATCCT CTCCGGCATT CACAGCGCTG AGTGCGAACG CCAGAGCATT
CTGGCGACCT TTCCGCGCTT CCGCGAGTTG GAGAAACGCC ATGGCAGTCT GATCCGCGGC
ATGCTTGCAG CGCGGCGCAC CGCGTCACCC TCTTCAGCGC ATCAGTCGCC CTTCATGACG
CTGCGCGGCG GCATGGGGAC GCTCGTCGAG CGGTTGGAAC AACGTCTCAC GGCGCGTATC
CTGACCAACC GCCGGGTGAT GGCGCTCACC TGTGATACAA CCGCTGCGCG TCCCTATCGT
CTGTGGTTGG ACGACGGCGC CACGCTGGAT GCCGATGCCG TCATTCTGGC GACGCCATCC
TACGCCGCTG CTGACCTCGT CGGTGCATCG TTCCCGGCGC TGGCGGATGC GTTACGCGCC
ATCCGGTACG TTTCGACCGC CACGGTCTCA CTGGTCTACC GGCGCAGTGA GGTCGGGACG
CCGCTCGATG GCTATGGTCT GGTCATTCCG CGCAGCGAAC AGACCTGGAT TAATGCATGC
ACCCTCTCCT CGGTTAAGTT TCGCCATCGC GCGCCCGATG AGTATCTGTT GCTGCGCTGC
TTCGTCGGCG GATCGCGTCG TCCAGAACTG CTGGCGCGGG ACGATGACGA CCTGGTGCGC
ATGGCGCAGT CCGATCTGCG CGCCGTTCTG GGCATCACCG CCGTGCCGCT GCTGACGCGC
GTGTATCGCT GGCATAACGG CAACCCGCAG TATGATGTCG GGCATCTGGA ACGAATCGCC
GCGCTCGAGG CGCTTTGTCC GGCGGGTCTT TTGCTGGCCG GCGCCGCGTA TCGTGGCGTT
GGCGTGCCCG ACTGCATCAA ACAGGGGCGT GAGGCGGCGC GTCGGGCGCT CGATGTGGTT
GCGACCGCTC GCTATCCGGT GATGGAAAAG TAA
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| Protein sequence | MTAMHSTSAA TLFPGGQPHI VVVGGGISGM SAAYELGRAT RDGAPPVMVT LIEREARLGG
KVVTERNGPF VIEGGPDSFM AQKPWAAELA REIGLGDELM VASPMRRTTW VLIRGRPQPL
PEGMLLIVPT RIAPFAFSPL ISPLGKLRMA LDLFVPARRD DGDETLADFI RRRLGNEALD
RLAEPILSGI HSAECERQSI LATFPRFREL EKRHGSLIRG MLAARRTASP SSAHQSPFMT
LRGGMGTLVE RLEQRLTARI LTNRRVMALT CDTTAARPYR LWLDDGATLD ADAVILATPS
YAAADLVGAS FPALADALRA IRYVSTATVS LVYRRSEVGT PLDGYGLVIP RSEQTWINAC
TLSSVKFRHR APDEYLLLRC FVGGSRRPEL LARDDDDLVR MAQSDLRAVL GITAVPLLTR
VYRWHNGNPQ YDVGHLERIA ALEALCPAGL LLAGAAYRGV GVPDCIKQGR EAARRALDVV
ATARYPVMEK
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