Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2015 |
Symbol | |
ID | 5539493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2582455 |
End bp | 2583690 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640894150 |
Product | RNA-binding S1 domain-containing protein |
Protein accession | YP_001432121 |
Protein GI | 156741992 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0652883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACAGC AAGAACAGGC TGCCACAAAC CATCAACAGA CGAACGCTGC CCAATCGTTC GGCGACGCTG CGAATGGCCA GTCAGCCGAT CAGCGTGACG ACCGGGAATT GATGGAGCAG TTCCTCGCCA ACCCTGCTCA CGACTACCGC AATCTTCAAT ATGGTGATAC GGTCGATGGC ATCATCATGC GCGTCGGTCG CGATGAGATT CTGGTCGACA TCGGCGCCAA AGCCGAGGGT GTGGTGCCGG CCAGAGAGAT GCAGTCGCTC TCTGACGATG ATCGAGCGGC GTTGAAACCG GGCGATCCGC TGCTGGTCTT TGTTGTTCAA TCCGAGGACA AAGAAGGTCG AGCGACGCTC TCGATCGATC GGGCGCGTCA GGAGAAGAGT TGGCGTCGCT TACAGCAGTG TTATGAGACC GGCGAGATTA TCGAAGCAAA AGTGATTAAC TACAACAAAG GTGGGCTGCT TGTCAATCTC GATGGTGTGC GCGGATTTGT GCCTTCCTCG CAGGTCAGCG GCATCGGTCG CGGCTCCGAG GCGCAGAAGC AGTCGGAGAT GGCGCGCATG GTGGGGCAGA CGCTGGCGTT GAAGGTGATC GAGATCAATC GTAATCGCAA TCGGTTGATC CTCTCGGAAC GCCAGGCTGC AATGGATGTG CGCGAAGGGC GCAAAGGTGA GTTGCTGTCG GCGCTGAAAG AAGGCGATGT TCGGGAGGGC GTCGTCACAT CCGTTTGTGA CTTCGGCGCG TTTGTCGATA TAGGCGGCGC CGATGGGTTG GTGCATCTTT CGGAACTTTC CTGGAGCCGG GTCAAGCATC CGAGCGAGAT TCTGAAGCCG GGTGACAAAG TGCAGGTGTA TGTGCTCAGT ATCGATAATG AGCGTAAACG GATTGCGCTC TCGCTGAAGC GTACCCAGCA CGAGCCGTGG GCCACGGTTG GCGAGCGGTA TCACATTGGC CAGATGGTTG AGGGTGTCGT GACGCAACTG GCGCCGTTCG GCGCATTCGT GCGGATTGAG GACGGGGTTG AAGGGCTGAT CCATGTGTCT GAAATGGGTG ATGGACGGGT CCAGCATCCG CGCGATGTGT TGCAGGAAGG CGATGCGGTC CAGGCACGCA TCATCCGTAT CGATCCGGCG CGGAAGCGCA TCGGTTTGAG CATGCGCCAG TCATCCGACG ATCAGATCGC GCATCAGTCA TCCGACAAAG AAGAGGAGTC TGATGCTGAC GAGTGA
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Protein sequence | MEQQEQAATN HQQTNAAQSF GDAANGQSAD QRDDRELMEQ FLANPAHDYR NLQYGDTVDG IIMRVGRDEI LVDIGAKAEG VVPAREMQSL SDDDRAALKP GDPLLVFVVQ SEDKEGRATL SIDRARQEKS WRRLQQCYET GEIIEAKVIN YNKGGLLVNL DGVRGFVPSS QVSGIGRGSE AQKQSEMARM VGQTLALKVI EINRNRNRLI LSERQAAMDV REGRKGELLS ALKEGDVREG VVTSVCDFGA FVDIGGADGL VHLSELSWSR VKHPSEILKP GDKVQVYVLS IDNERKRIAL SLKRTQHEPW ATVGERYHIG QMVEGVVTQL APFGAFVRIE DGVEGLIHVS EMGDGRVQHP RDVLQEGDAV QARIIRIDPA RKRIGLSMRQ SSDDQIAHQS SDKEEESDAD E
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