Gene Rcas_2011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2011 
Symbol 
ID5539489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2577544 
End bp2578908 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content65% 
IMG OID640894146 
Productdihydrolipoyllysine-residue succinyltransferase 
Protein accessionYP_001432117 
Protein GI156741988 
COG category[C] Energy production and conversion 
COG ID[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 
TIGRFAM ID[TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.39868 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGACA TTACCATGCC CAAGATGGGC TTCGACATGC AGGAGGGCAC GATCGTTCGC 
TGGCTGAAGA AGCCAGGTGA CGAGGTTCGC CGCGGTGAGC CAATTGCCGA AATCGAGACG
GATAAGGTGA CTATTGAGAT CGAGGCGTTT GAGTCCGGCA CTCTCACCGA GATTGTCGTG
CCGGAAGGAC AGTCGGCGCC GGTCAATGCG GTCATTGCTC GACTTGACGG CGGCAACGGA
GCGCAACCGC CCGCCCCCGC ACCGATCGCC GAAGCGCCTG CACCCGCGTC CGTCGCTGAA
GCGCCTGCAC CTGCCACACC CGAGCCGGTT GTCGCGGCGC CCGCCGTGGA AGTGGGAGAG
GTCCGCGCAT CACCGCTGGC GCGTCGTCTG GCGCGCGAAC ATGGGGTCGA TCTGCGCCAG
GTGCGCGGTA GTGGCCCGGC AGGGCGCATC GTGAAGGAAG ACATCGAAGC GTACCTGACT
GCGCGCGGCG CGGCGCCGGC GCCTGCTCCG ACACCCATGC CAAAGGCGCC GGCGCCGGTC
CCCACACCTG TACCAACGGC GCCCGCCCCT GCACCTGCGC CGGCAATGGC TGCGCCGACG
CCAGCAGTGC AGCCCGCGCC GACGCCAGCA GCGCCCGTTG CGCCGCCAAC GCCTGCACTG
GTCGGCGCGC CGCTGGCCGC CGTCGTACCG CTGAGCAATA TGCGCAAGAC CATTGCGCGC
CGCATGCTGC AAAGCTGGCA GCAGTTTCCG CACATCTTTG TGTCTATCGA AGTCGATATG
GGTGCAGCGC TTGCATTGCG CGCGCAGGCG AACGCCGGAC GGGCAAAAGA GGAACAGTTC
TCGGTCAACG ATATGGTGGT CAAAGCGTGC GCTGGCGCGC TGCTCGCCTT TCCCAATCTC
AACGCCTCCT ATAGCGACGA AGGGATCATC CGGCATCCGA TGGTCAATAT CGCCATTGCG
GTCGCATTGG AGAGCGGGCT GATGGCGCCG GTTGTGACCA ATTGCCAGGA CCGCTCACTC
GGTTCGATTG CGCGCGAGAC CAAACGGGTC GTTGTGCTGG CGCGCGAGGG GAAGATCACC
CCCGATCTGC TTCAGGGAGG CACGTTTACG GTCAGTAATC TGGGGATGTA CGGCATCACT
GAATTCACAT CGATCATCAC GCCGCCGCAA GCCGCCAGCC TGGCGGTCGG CACAATCCGG
CGCGTCCCGG CGTTCAAAGA CGACAGCGAC GAGGTGGTGG CAAAACATCT GATGATGCTG
ACCCTCTCGG CGGACCACCG CGTCACCGAC GGCGCTGAGG CGGCTCAGTT TCTCAACGAG
GTGAAACGCC TGTTGGAGCA ACCACTGGCA CTGCTGGTAG GGTGA
 
Protein sequence
MPDITMPKMG FDMQEGTIVR WLKKPGDEVR RGEPIAEIET DKVTIEIEAF ESGTLTEIVV 
PEGQSAPVNA VIARLDGGNG AQPPAPAPIA EAPAPASVAE APAPATPEPV VAAPAVEVGE
VRASPLARRL AREHGVDLRQ VRGSGPAGRI VKEDIEAYLT ARGAAPAPAP TPMPKAPAPV
PTPVPTAPAP APAPAMAAPT PAVQPAPTPA APVAPPTPAL VGAPLAAVVP LSNMRKTIAR
RMLQSWQQFP HIFVSIEVDM GAALALRAQA NAGRAKEEQF SVNDMVVKAC AGALLAFPNL
NASYSDEGII RHPMVNIAIA VALESGLMAP VVTNCQDRSL GSIARETKRV VVLAREGKIT
PDLLQGGTFT VSNLGMYGIT EFTSIITPPQ AASLAVGTIR RVPAFKDDSD EVVAKHLMML
TLSADHRVTD GAEAAQFLNE VKRLLEQPLA LLVG