Gene Rcas_1992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1992 
Symbol 
ID5539470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2557326 
End bp2558177 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content54% 
IMG OID640894127 
Producthypothetical protein 
Protein accessionYP_001432098 
Protein GI156741969 
COG category[S] Function unknown 
COG ID[COG3463] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00396912 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTTCAATG GTCAATCCCA AAGCGTTTTT GCATCTCGCT TCGACCGCTA TGGCGCAACT 
CCAGGTGATA TTCTTCGGTC CATCTTTCTG CGACCGGATC GCGTTGTTCT TGACCTGTTT
CATTCTGAAA ATCTCCACTA TCTGGCTCTG GTGCTGGCAC CTCTCGGCAT GCTGCCGTTG
CTCAGTCCAT TGCATGCCGC TCTGGCGTTG CCAGCCCTTA CGTTGAATAT GCTCAGCAAC
TACGATGCTC AGCGCTCACT GCTCTTCCAT TATGATGCTC TCCCGGTCGC ACTGGTGTCA
TATGCATGTC TCGACGCTGC TATCATGCTC CGGGGTTGGT GGAAGCCGCG TGTGGCGTTT
GTCGTATGTG CGCTTTGCAT TATATGCGGA GCATGCTGGA CCGTTGCGGC GGTCCCATTG
AGAATTCAGG ATGCATTGTT TCCGGCGGTG CGCGACGTAG AATGGTCCTA TGTTCGCCGT
TATATCCTTA CCTACATTCC GCGTGATGCG GCAGTCTCAG TTAGTCCTGC GCTCCATCCG
CACCTGATGC ATCGCACACA GGCGTTTGTG TTTCCCAATC CCTTCGTTCG TATTCACTAC
GTCAATCCCG CCGGAGCGCC GCAACCACCA TCTATCGATT GGATTGTCCA TGATTATTAT
GGTATGGGGC GGGCGACTGC CAACCGCGAG CGGGAATTGC TGAGCGATTT AGAGCGGCGC
AAACTGTTTG TTCCTGTCAT GCGAGTTGGC ACTATCACGC TGATGAAACG CACCGACTCG
TCTCTGCCGG CTTCCTGCTT TGGCGCCGGC TGGCAGAGTG TGGATTGTCT CTCTGCATAC
CAAAATCGAT GA
 
Protein sequence
MFNGQSQSVF ASRFDRYGAT PGDILRSIFL RPDRVVLDLF HSENLHYLAL VLAPLGMLPL 
LSPLHAALAL PALTLNMLSN YDAQRSLLFH YDALPVALVS YACLDAAIML RGWWKPRVAF
VVCALCIICG ACWTVAAVPL RIQDALFPAV RDVEWSYVRR YILTYIPRDA AVSVSPALHP
HLMHRTQAFV FPNPFVRIHY VNPAGAPQPP SIDWIVHDYY GMGRATANRE RELLSDLERR
KLFVPVMRVG TITLMKRTDS SLPASCFGAG WQSVDCLSAY QNR