Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1992 |
Symbol | |
ID | 5539470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2557326 |
End bp | 2558177 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640894127 |
Product | hypothetical protein |
Protein accession | YP_001432098 |
Protein GI | 156741969 |
COG category | [S] Function unknown |
COG ID | [COG3463] Predicted membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00396912 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTTCAATG GTCAATCCCA AAGCGTTTTT GCATCTCGCT TCGACCGCTA TGGCGCAACT CCAGGTGATA TTCTTCGGTC CATCTTTCTG CGACCGGATC GCGTTGTTCT TGACCTGTTT CATTCTGAAA ATCTCCACTA TCTGGCTCTG GTGCTGGCAC CTCTCGGCAT GCTGCCGTTG CTCAGTCCAT TGCATGCCGC TCTGGCGTTG CCAGCCCTTA CGTTGAATAT GCTCAGCAAC TACGATGCTC AGCGCTCACT GCTCTTCCAT TATGATGCTC TCCCGGTCGC ACTGGTGTCA TATGCATGTC TCGACGCTGC TATCATGCTC CGGGGTTGGT GGAAGCCGCG TGTGGCGTTT GTCGTATGTG CGCTTTGCAT TATATGCGGA GCATGCTGGA CCGTTGCGGC GGTCCCATTG AGAATTCAGG ATGCATTGTT TCCGGCGGTG CGCGACGTAG AATGGTCCTA TGTTCGCCGT TATATCCTTA CCTACATTCC GCGTGATGCG GCAGTCTCAG TTAGTCCTGC GCTCCATCCG CACCTGATGC ATCGCACACA GGCGTTTGTG TTTCCCAATC CCTTCGTTCG TATTCACTAC GTCAATCCCG CCGGAGCGCC GCAACCACCA TCTATCGATT GGATTGTCCA TGATTATTAT GGTATGGGGC GGGCGACTGC CAACCGCGAG CGGGAATTGC TGAGCGATTT AGAGCGGCGC AAACTGTTTG TTCCTGTCAT GCGAGTTGGC ACTATCACGC TGATGAAACG CACCGACTCG TCTCTGCCGG CTTCCTGCTT TGGCGCCGGC TGGCAGAGTG TGGATTGTCT CTCTGCATAC CAAAATCGAT GA
|
Protein sequence | MFNGQSQSVF ASRFDRYGAT PGDILRSIFL RPDRVVLDLF HSENLHYLAL VLAPLGMLPL LSPLHAALAL PALTLNMLSN YDAQRSLLFH YDALPVALVS YACLDAAIML RGWWKPRVAF VVCALCIICG ACWTVAAVPL RIQDALFPAV RDVEWSYVRR YILTYIPRDA AVSVSPALHP HLMHRTQAFV FPNPFVRIHY VNPAGAPQPP SIDWIVHDYY GMGRATANRE RELLSDLERR KLFVPVMRVG TITLMKRTDS SLPASCFGAG WQSVDCLSAY QNR
|
| |