| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1984 |
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| Symbol | |
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| ID | 5539462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2542652 |
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| End bp | 2543671 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640894119 |
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| Product | CRISPR-associated Cas1 family protein |
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| Protein accession | YP_001432090 |
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| Protein GI | 156741961 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.424178 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACCC TCTACGTGAC CGAACAGGGC AGCGAGATCG GCTGCGACGG TGAACGGTTG
GCAGTGCGGC GCGACAACGC CATCATCGCC AGCATACCGC TGATCAAGAT CGAGGACATC
GTCATTATCG GCAACGTCGG ACTGAGCACC CCCGCCATCA AGCGCATGCT CGACAACGGC
ATCAACGTCA CGTTTCTGAC GGTACACGGG CGCTATCAGG GGCGATTGGT CGGCAGCGTC
AGCGCCCATG CCGCGCTGCG CGCCGCACAA TATCGGCGCG CCGACGACCG CGCCTGGTCG
CTGCGCCTGG CGCAGCGGTT CGTCGAAGGC AAACTGCGCA ACTGCCGCGC CCTGCTGCGC
CGTTTTGCGC GCAACCGCGC CGACGCGCCA GCGGAAGCCG GGCAAGCCGC CGACGACCTC
GACCGCTTCA TTGATCGCGT GCCGCGCACC ACCACCCTCA ACGCACTTAT GGGAGTGGAA
GGCAGCGCCA CTGCGCGCTA CTTCGCCGGC GTCCGCGCCC TGATCGGAGC GGAATGGCGC
TTCGAGGCGC GCATCCGGCG TCCACCGCCG GATCGTGTGA ACGCCCTGCT CTCGTTTGGC
TACACCCTGC TGGTTCACAA AATGCTCGGC GCCGTTGAAG CAGCCGGCTT CGACCCGTAT
CTCGGCTACC TCCACCACAT CGACTACGGA CGACCATCAC TGGCGCTCGA CCTGATCGAA
GAGTTCCGCC CTATCCTGGT CGACTCGCTA GTAATCCGTT GTTGCAACGA CGGGCGCATC
GCGTTCGACG ACTTCACCGA AACGCCGGAT GGCGACTATC CGGTCTTGCT GAGTGATGAC
GGCAAACGGC GCTTTGTCGC CGCATTCGAG GAACGCATGC GCACTGAAGC CACCCATCCC
GACGGCGCCG ACGGACGACC GGGGAAAGTC AGTTACCTGC GCTGTCTGGC GCTTCAGGCG
CGGCGTCTGG CGCGAGCGGT GCAGGGAGGA GCGGACTACG AACCGTTTGC TGTGCGATAA
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| Protein sequence | MDTLYVTEQG SEIGCDGERL AVRRDNAIIA SIPLIKIEDI VIIGNVGLST PAIKRMLDNG
INVTFLTVHG RYQGRLVGSV SAHAALRAAQ YRRADDRAWS LRLAQRFVEG KLRNCRALLR
RFARNRADAP AEAGQAADDL DRFIDRVPRT TTLNALMGVE GSATARYFAG VRALIGAEWR
FEARIRRPPP DRVNALLSFG YTLLVHKMLG AVEAAGFDPY LGYLHHIDYG RPSLALDLIE
EFRPILVDSL VIRCCNDGRI AFDDFTETPD GDYPVLLSDD GKRRFVAAFE ERMRTEATHP
DGADGRPGKV SYLRCLALQA RRLARAVQGG ADYEPFAVR
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