| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1979 |
|---|
| Symbol | |
|---|
| ID | 5539457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2535012 |
|---|
| End bp | 2535848 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640894114 |
|---|
| Product | CRISPR-associated RAMP Csm3 family protein |
|---|
| Protein accession | YP_001432085 |
|---|
| Protein GI | 156741956 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1337] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR02582] CRISPR-associated RAMP protein, Csm3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.206757 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGG AACGATTCGT CACCCTCCAC GGGCGCATCT TTCTGCGCGC CGACATCGAA
CTGCTCACCG GCTTGCACAT CGGCGGCGCG GCTGCCGGGC TGGAAATCGG CGGGCTGGAT
AAGCCGGTGA TCCGCAACCC GCGCACGAAT GAGCCATACA TCCCCGGCTC TTCGCTCAAA
GGCAAACTAC GGTCACTCAT GGAAAAGGCG CATGGCGCGC CACAAACGTT TCGAGTCAAT
GAAGGAGTGT TCGTCCACGC GCCCGAAAGC ATCGCACAGT ACCGTCAGTA CCAGATGATC
GGCGGCGTGT TCGGCGTGTT GCCGCGCTGG GGTCCGAACG GGAATCGCAA CGCCTTCACC
GTGCCGGCGC CAACGCGCCT GGCGGTGCGC GACGTGCCGC TGCGCGCCGA GTCGCGTGAG
GAATTGAAGC GCCTGCGCAC CGACCTGCCG TTTACCGAAA TCAAGTGGGA AGCCGCCATC
GACCGGGTTA CATCCGCTGC TGCGCCGCGT CAGATCGAGC GCGTGCCCGC CGGTGCGGTC
TTCGGTCCGG CGGAACTGGT CTATAGCGTG TATGTGGGGA AGGAGGAAAC ACCGACCGGT
GTCGCTGCGC TGTTCGATAC GGTCATTGAG GCGCTGCTGC ACCTGGAAGA CGATTACCTT
GGCGGCATGG GGTCGCGCGG CAACGGGCAG GTGCGCCTGA AGAATCTGCA CATCAGCGCG
CGGCGCGTCC GCAACGGGCA GTATGGCGAC GAAATGCAGT TCGATAGCCA ACCGGCGTCG
CTGAAAGAAC TCGACCGCGC GGCGCTGAAG ACGTGGCTGG AGAAGACCTT CGCGTAG
|
|---|
| Protein sequence | MMTERFVTLH GRIFLRADIE LLTGLHIGGA AAGLEIGGLD KPVIRNPRTN EPYIPGSSLK
GKLRSLMEKA HGAPQTFRVN EGVFVHAPES IAQYRQYQMI GGVFGVLPRW GPNGNRNAFT
VPAPTRLAVR DVPLRAESRE ELKRLRTDLP FTEIKWEAAI DRVTSAAAPR QIERVPAGAV
FGPAELVYSV YVGKEETPTG VAALFDTVIE ALLHLEDDYL GGMGSRGNGQ VRLKNLHISA
RRVRNGQYGD EMQFDSQPAS LKELDRAALK TWLEKTFA
|
|---|
| |