Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1951 |
Symbol | gatA |
ID | 5539429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2500999 |
End bp | 2502471 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640894087 |
Product | aspartyl/glutamyl-tRNA amidotransferase subunit A |
Protein accession | YP_001432058 |
Protein GI | 156741929 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
TIGRFAM ID | [TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.735841 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.759727 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGCCTC TCTATCAGTT GACGGTTGCT CAGGCGCGCG AGATGCTGGC GCGCGGCGAG ATTTCCTCGT TGGAATTGAC CGACGCGCTG CTGACGCGGA TTGCCGCTGT GGAACCGAAG GTGCGCGCGT TTCTTGTGGT TGATGCCGCT GGCGCGCGGG CACAGGCGCG CGCAGCCGAT GCGCGTCGTG CGGCCGGCGA TGCGTCGCCG TTGCTCGGTA TTCCAATGGG TATCAAGGAT GTGATTTCGA CGCAGGGGCT GCGCACGACC TGCGCCTCGA AAATGCTTGA GAACTATACA CCGGTGTACG ATGCGACGGC GGTGGCGCGG TTGAAGGCAG CAGGTGCGGT GATCCTCGGC AAACTCAATT GTGATGAGTT CGCCATGGGG TCCTCGACCG AGAACAGCGC CTTTCAGCAG ACGCGCAATC CCTGGAACCT TGAACGGGTT CCAGGCGGTT CATCCGGCGG TTCAGCAGCA GCCGTCGCTG CCGGCGAGGC GCCGGCTGCC CTTGGCACCG ATACTGGCGG CTCGATCCGC CAACCGGCGG CGCTCTGCGG CATTACCGGT CTCAAGCCGA CCTATGGGCG CGTGTCGCGC TACGGACTGG TGGCGTTTGC CTCGTCACTC GATCAGATCG GTCCGATGGC GCGCACGGTG CGCGATTGTG CGATTGTGCT CCGGGTTATC GCCGGGGCGG ATCCGTTCGA CGCTACCTGC ACCGATTATC CGGCGCCGGA TTACGAAGCG GCGTTGACGG GTGATATTCG TGGGTTGCGC ATTGGCGTTC CGCGCGAGTA CTTCGTCGCC GGTATGCAAC CCGACGTCGA GGCGGCGGTG CGCACTGCCA TCGAGGTTCT GCGCGAACAG GGCGCGGAGG TGTGTGAGAT TAGCCTGCCA CATACCCCAT ATGCGCTGCC AGTTTACTAC CTGATCGCTC CCGCCGAAGC CAGCGCCAAC CTGGCGCGTT TCGATGGCGT GCGCTATGGG TTGCGCGTTC CAGGCGAAAG TTACTTCGAT GAACTCGAAC GCACCCGCGG CGCCGGGTTC GGTCCAGAAG TTCGCCGCCG CATTATGCTG GGAACGTATG CGCTCTCGGC AGGGTACTAC GATGCCTATT ATAAACGCGC CCAACAGGTG CGTACCCTCA TTCGCCGCGA TTACCAGCAG GCGTTCGAGC AGGTCGATGT TATCGCGGCG CCGACGACGC CGACCGTTGC GTTTAAGATC GGTGCGCACA CCGATGATCC CCTGGCGATG TATCTGGAGG ATGTCTGCAC CCTGCCGCTG AATCTGGCAG GATTGCCGGG TCTTGTGGTT CCGTGCGGGT TTGCCGAAGG ATTGCCGATT GGGCTGCAAC TGATCGGGCG GGCATTCGAT GAAGAGTCGC TCCTGCGCGT CGGCGATGCC TATCAGCGTG TGACCGACTG GCATACGCGG ATGCCGGAAG TGCGCGAGGA CGGTTCCGCT TGA
|
Protein sequence | MTPLYQLTVA QAREMLARGE ISSLELTDAL LTRIAAVEPK VRAFLVVDAA GARAQARAAD ARRAAGDASP LLGIPMGIKD VISTQGLRTT CASKMLENYT PVYDATAVAR LKAAGAVILG KLNCDEFAMG SSTENSAFQQ TRNPWNLERV PGGSSGGSAA AVAAGEAPAA LGTDTGGSIR QPAALCGITG LKPTYGRVSR YGLVAFASSL DQIGPMARTV RDCAIVLRVI AGADPFDATC TDYPAPDYEA ALTGDIRGLR IGVPREYFVA GMQPDVEAAV RTAIEVLREQ GAEVCEISLP HTPYALPVYY LIAPAEASAN LARFDGVRYG LRVPGESYFD ELERTRGAGF GPEVRRRIML GTYALSAGYY DAYYKRAQQV RTLIRRDYQQ AFEQVDVIAA PTTPTVAFKI GAHTDDPLAM YLEDVCTLPL NLAGLPGLVV PCGFAEGLPI GLQLIGRAFD EESLLRVGDA YQRVTDWHTR MPEVREDGSA
|
| |