Gene Rcas_1942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1942 
Symbol 
ID5539420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2487912 
End bp2489144 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content64% 
IMG OID640894078 
Productglycosyl transferase group 1 
Protein accessionYP_001432049 
Protein GI156741920 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000293265 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACATTC TCATGCTCAC CTCGTCGTAC CCAAAGTACG TTGGGGAGAC GACAGCGCCC 
TTCGTTGAAG CGATAGCGGT CGGTCTGGCG CGACGGCGGC ACACGGTGCA TGTTGTTGCG
CCGTTTCACC CCGATGTGCG GCGCGCGCCG GTTGAGTACG GCGTGCGGTT GCACTTTTAC
CGCTATGCCC CACACCGCGT TCTCAATGTC TATGGCTATG CCGAGTCGTT GCATGCCGAC
GTTGGTCTGC GCCGCACGGC GCTGGCGGCG GTTCCGTTTG CGCTGGCAGC GTCGCTCCGG
GCGCTGCTGC ACCTGACGCG CCATCACCGG TTCGATGTGA TCCACGCGCA CTGGGTGCTG
CCAAATGGCG CACCGGCTAT GCTTGCCGCC CGGTTGCGCA ACCTGCCGCT GGTCGTCAGC
CTGCACGGGT CCGATGTCTA TCTGGCGTCC AGGGGATGGC CCCTCGCGCT GAGCGCCGTC
GCCGTCTTTC GCAGCGCGGG CGCTATCACC GCGTGCAGCA GTGATCTGTA TCAGCGCGCG
CTGCGCCTCG GCGCGCCGCC TGCGCACACA ACGGTCATTC CATACGGCGT TGATGCGCAC
GCCTTTCGCC CCGATCCGCG CGCTGGCATC CAGGTGCGCG CCGAATTGCA CCTGCCACCT
GATACGTTGC TTATTCTCGC CATGGGCAGA ATGGTCTACA AGAAAGGATT CACCTTCCTG
CTTGATGCGC TGCCGCACAT CCGCGCACTG CATCCGCGTG CGACCCTGGT GCTGGCGGGG
TACGGCGATC TCCTCGATGA ACTGAAGGAG CATGCCAGGA GGCTCGGTGT CGCAGATGCG
GTCATTTTTC CGGGGCAGCT TCCACGCGAC CGCGCGGCGC GCTACGTCGC CGCCGCCGAT
GTGTATGTCG TACCCTCGGT GCGTGATGAT GCCGGTAATG TTGATGGCCT GCCCAATACG
CTCCTCGAAG GTATGGGAGC GGCGCGCCCG ATTGTTGCGA CTCGCACGGC CGGCATTCCC
GATGTCATCG CCGATGGTGT GCATGGCCTG CTCGTCCCGG AACGCGACCC GGTGGCGCTG
GCTGATGCCA TCGTGCGTCT GCTGAGTGAT CGCAATCTTG CAGCGCGTCT TGGAGAAGCG
GCGCGCCGCC GGGTGCTGGA CGAACTCTCC TGGGATGTGA CGGCGGTGCG CTTCGAGGAG
GCGTACCGTC ATGCCGTTGA ATGTAAACTT TAG
 
Protein sequence
MNILMLTSSY PKYVGETTAP FVEAIAVGLA RRRHTVHVVA PFHPDVRRAP VEYGVRLHFY 
RYAPHRVLNV YGYAESLHAD VGLRRTALAA VPFALAASLR ALLHLTRHHR FDVIHAHWVL
PNGAPAMLAA RLRNLPLVVS LHGSDVYLAS RGWPLALSAV AVFRSAGAIT ACSSDLYQRA
LRLGAPPAHT TVIPYGVDAH AFRPDPRAGI QVRAELHLPP DTLLILAMGR MVYKKGFTFL
LDALPHIRAL HPRATLVLAG YGDLLDELKE HARRLGVADA VIFPGQLPRD RAARYVAAAD
VYVVPSVRDD AGNVDGLPNT LLEGMGAARP IVATRTAGIP DVIADGVHGL LVPERDPVAL
ADAIVRLLSD RNLAARLGEA ARRRVLDELS WDVTAVRFEE AYRHAVECKL