| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1936 |
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| Symbol | |
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| ID | 5539414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2478442 |
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| End bp | 2481084 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640894072 |
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| Product | ATP-dependent transcription regulator LuxR |
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| Protein accession | YP_001432043 |
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| Protein GI | 156741914 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.443116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000309593 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGAAT CGCTGCTCAG AACCAAAATC GCCCTTCCTG CCCGCCACCA TTGCTTCATT
CCCCGTCCGC GCCTCATCAC GCAACTGCAC CGCCTCATTG ATGTTCCGGC GACGCTCGTC
AGCGCTCCAA CCGGTTTCGG TAAAACAATG GCGGTGCAGG AGGCGCTGCG CGCGCTGGCA
ACACGACACG CGGCGGCGAT AGCATGGCTC ACACTCGACG TTCACGACAA CGATCCGGTT
CAATTCTGGC GATATGTGGC GCTGGCGCTG CACACCACCC TTCCTGCGTG CGGCGCAACG
TTGATCGAGG CGCTCACCGG ACCGCAACCT GCGCCGGTTC GTTCGCTGCT CGCTGCGACA
CTCAACGAAA TTACTGCGCA AACGCAACAC CTTGTGCTCG TTCTGGACGA TTACCACCTG
ATCGATCTGC ATGCGATCCA CGACGATCTG ACCTTTCTGA TCGAGTATGC ACCGCCGAAT
CTGCATATCG TGTTCATCAC ACGCGCCGAC CCGCCGCTGC CGCTGCACCG TTGGCGCGCG
CGGGGGCAGT TGCTCGAAGT GCGTGCGACT GATCTGCGCT TTGATCTGAC CGAGACGACG
ACGCTGCTCA ATGATGTTAT GCGCCTGGGG TTGAGCGCAG AAGAGATCAT GACCCTGCTC
CGCCAGACTG AAGGATGGCC CGCCGCTCTG TCCATGGCCG GGCTGGCGTT GCGCGACGAT
ACCGCACCGT CACCGACACG ACATATCGCG CAACTAGCGC AACACAACCG ATTCATTATC
GAATATCTGA CCGACGAGGT GCTTGCGCAA CAACCGGCGG AGGTGCGCGC ATTGTTGTTG
CGCATTGCCG TCTTGGAGCG GTTCTGCGGT TCGCTCTGTG ATGCAGTGGC GGAAACGACC
GGCAGCGCCG CGCTCCTCGA AACGCTGGCG CAAACGCATG GGTTCATCGT CCCCCTACCG
TCCGCACCGA ACGATGAACC CTGGTTTCGC TTTCATCGGT TATTCGGCGA CCTGCTGCGC
GGTCAGGCGC GCTGCACCTT TCCCGAAGAT GTGGATGCAC TGTACCGACG CGCGGCAGCC
TGGCACGCTG CGCATGGCGA TGTCGAGCAG GCTGTCGAAT ATGCCATTGC TGGACACGAT
TTCGCGCACG CGGCGCAACT GATCGAGCGC TCCGCCAACA CGTTGGTGAT GGAAGGGCGG
GCGGCCCTCC TCGAACGCTG GTTGCACCTG TTGCCCGATG CGTGGCGACA GACCATGCCC
CGCGCCGGTG TCGCCGTTGC GTGGGCATTG ATCCTGCGCG GACGCTACAG CGAGGTTGCG
CCATACCTGG ACCAGGCGGA AACGACTATG CTCCCGGATG CGCCCGCGCT GCGCGGGGAA
CTCCACGCGG CGCGCGCCGT TCTCGCCGAA ACGCAGGGAC GCGCGGCAGA GGCGCTCGTG
CATGCCCGAC AGGCACTCGA CCTCGCCCCC GCCGACCATC TCATTGCACA GGCGGTGGCG
CACACCGCAA TCGCTGGCGC ATTGCGCATC TCCGGCGACA TAGATGCCGC CATCGCTGCG
TATGAACAGG CTGTGCCACT CTGCCAGGCG GCGTGGTTGC GGCTGCCAGC GCTCCTCGGG
CGCGCCCATC TCGGCTTGCT CTACCTGACA CAGGGGCGTC TCCGCAGCGC CGAAGCCGCC
CTCAAGCCAG CGTTGCAGTC CGCAATCTTC ATCCCCGCCG CCAGCCCGGT GTTCATCGCA
TATAGCGCCA TTCTGATCGA ACGCAACCAA CTGGAAGACG CACACCAACA TTTGCGACAT
GCCCTGGACC TGGCGCAGCA GAGCGGGCAT ACTGCTGCAC TGGCTCAGTG CCATCTCCAC
CTGGCGCGGT TACGGCGTGC GCAGGGCGAT CTGGCAGGGG CGCAGGTTGC ACTCGATACC
GCTGCGACGT TTACGGCTCA GGGAGTGCCG GCATGGGTCG AGCCGTTGCT GATTGCAGAA
CGGGTGCGCC TGTATCTCGA TCAGGGCGCC ATAACCAAAG CCAGGCATGC GCTGGCAAGT
CGCGGCACGG ACATCGAAGC AGTCGCTGGT GCGGTGCGCG AGGCGCTGCC GCTGATACGC
GCGCGCCTGC TGCTGCACCA GGGTCGTAGC GCTGACGCGC GCGCATTCCT CGACAACATT
ATCGCATCGG CAGAACAGTC TGGTCGCCAG GGACGGGTCA TCGAAGCGTT GATCCTGCGC
ACACTGGCAT GCGCCGCATT GAATGACGAA GCCGCAGCCC GCGACGATCT TCAACGTGCC
CTGGCGATGG CGGAACCAGA AGGGTATGTT CGCATCTTTC TCGACGCCGG CGCGCGACTG
GCGCGCCTGC TCCATCGTAT CGGAAGCGCC TACGCGGGCC GTCTCCTGGA AGCGTTTCCA
TCGTCTGTGC GCGCCCGCGT GGCCAACCTG ACAGAATCGC CTGAGCCGTT GACTGACCGC
GAGCGTGATG TGCTGCGGTT GATGGCGCGC GGGTTGACCT ATCGGCAGAT TGCCAGCGAG
CTCGTTGTGA GCGTCAACAC GGTACGCTAC CACATCAAGA GCCTCTACAG CAAACTCCAG
GTAAACAGCC GCACGCTGGC GCTTGCCCGC GCACACGAAC TGCATCTCTT CGAAGAGGAC
TGA
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| Protein sequence | MSESLLRTKI ALPARHHCFI PRPRLITQLH RLIDVPATLV SAPTGFGKTM AVQEALRALA
TRHAAAIAWL TLDVHDNDPV QFWRYVALAL HTTLPACGAT LIEALTGPQP APVRSLLAAT
LNEITAQTQH LVLVLDDYHL IDLHAIHDDL TFLIEYAPPN LHIVFITRAD PPLPLHRWRA
RGQLLEVRAT DLRFDLTETT TLLNDVMRLG LSAEEIMTLL RQTEGWPAAL SMAGLALRDD
TAPSPTRHIA QLAQHNRFII EYLTDEVLAQ QPAEVRALLL RIAVLERFCG SLCDAVAETT
GSAALLETLA QTHGFIVPLP SAPNDEPWFR FHRLFGDLLR GQARCTFPED VDALYRRAAA
WHAAHGDVEQ AVEYAIAGHD FAHAAQLIER SANTLVMEGR AALLERWLHL LPDAWRQTMP
RAGVAVAWAL ILRGRYSEVA PYLDQAETTM LPDAPALRGE LHAARAVLAE TQGRAAEALV
HARQALDLAP ADHLIAQAVA HTAIAGALRI SGDIDAAIAA YEQAVPLCQA AWLRLPALLG
RAHLGLLYLT QGRLRSAEAA LKPALQSAIF IPAASPVFIA YSAILIERNQ LEDAHQHLRH
ALDLAQQSGH TAALAQCHLH LARLRRAQGD LAGAQVALDT AATFTAQGVP AWVEPLLIAE
RVRLYLDQGA ITKARHALAS RGTDIEAVAG AVREALPLIR ARLLLHQGRS ADARAFLDNI
IASAEQSGRQ GRVIEALILR TLACAALNDE AAARDDLQRA LAMAEPEGYV RIFLDAGARL
ARLLHRIGSA YAGRLLEAFP SSVRARVANL TESPEPLTDR ERDVLRLMAR GLTYRQIASE
LVVSVNTVRY HIKSLYSKLQ VNSRTLALAR AHELHLFEED
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