| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1903 |
|---|
| Symbol | |
|---|
| ID | 5539381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2449122 |
|---|
| End bp | 2453762 |
|---|
| Gene Length | 4641 bp |
|---|
| Protein Length | 1546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640894040 |
|---|
| Product | glutamate synthase (ferredoxin) |
|---|
| Protein accession | YP_001432011 |
|---|
| Protein GI | 156741882 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00598503 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAAC TGAAGCAACC AGAGATGCGC GGACTGTACG ACCCGCGTTT TGAACACGAT
GCATGTGGTA TTGGGTTCGT TGCCCGCCTG AGCGGTGAAC CGAGTCACAC GATACTGGCG
TATGCGCTGA CCGCTGTCGG ACGGATGGCG CACCGCGGCG GAGTGGCGGC TGATGGAAAG
AGCGGCGATG GCGCCGGTGT GCTGACGCAG ATTCCGCGCG CCTTCTTTGC TCGTGAACTG
GCAATACGCG GTGTTCGTTA CCCGGTCGAG GATCTTGCGG TTGGCATGTT TTTCTTGCCG
CAGCACGAAG GGCATCGGAG TACAGCGCGC GGTATCGTGG AGCAGATTCT TGCCCAGTAT
GGCATGGCGC TGCTGGCGTG GCGTCCGGTT CCTGTCAACC TCGATGCGCT CGGCGACAGC
GCGCGCGAGT CGTGCCCGGT GATCGAGCAA GCCCTGATTG CCCGCCCGCC ACATAACCAT
ACCGCGCCGA ATGCCTATGA GCGCGCGCTC TACCTGGCGC GCCGCACGAT TGAAGCCGAG
GCGCGCGCGC ATCGCCTGGA AGGGTTCTCC ATTCCTTCGC TCTCAAGCCG GACGCTGGTC
TACAAAGGGT TGCTGGTTGC GCCAGCATTG CCTGAGTTCT ACGACGATTT GCACGATCCG
CTGTATGAAA CGGCGATTGC GCTCTATCAT CAGCGCTATT CGACCAATAC TTTCCCAACG
TGGGAACGCG CCCAACCGTT CCGCATGCTG TCGCACAATG GCGAGATCAA TACCTTGCGC
GGCAACATTA CCTGGATGCA GGCGCGCGAA GCGGAATGGC GCCGCGCTGC CGCTGCTGCA
CAGCAATCCA GGTTGATCGA AGCGTCGATT GATGGCGATC CGCTGGCAAT GGCGCTCAGC
GCTGCCATGA TCGGTCCGGT TGTCGATACG AGCGGCAGCG ACTCGGCAAT GCTCGATAAT
GTGCTCGAAT TGCTGGTGAT GGGCGGGCGC GACATTCGCC ATAGCCTGAC GATGCTTGTT
CCCGAAGCCT GGGAACGGGT ACACGATATG GAACCGCCTC GACGCGCGTT CTATCAGTAT
CATGCCGGTA TGATGGAACC ATGGGACGGT CCGGCGGCGC TGGCGTTCTG CGACGGTCAG
GTGGTCGGGT TGGCGCTCGA CCGCAATGGG TTGCGCCCGG CGCGCTACCT GCTCACCGAT
GATGGTCTGG TGGTCTGTGG CTCGGAAGTC GGCGCAGTCT CTATCGATGA GTCGCGTGTC
ATCCGTAAAG GCAAGGTTGG TCCTGGTCAG ATGATTGCCG CCGATCTGCG CGCGGGGCGC
TTCGAGGAAA ATGACGACAT CCGCAGCGCG CTTGCAGCCC GGCAACCGTA TGCCGAGTGG
CTCAAGCGCC ATATGCGCGT GCTGGCGCCG GCCGGTGCGC CGCGTGTCAG CGAACCGGAC
GAGCCGGAGA GCCGCTCTGC GCGCGAGAGT AAATCGGCGC TGCTCGGTGA GTTGCAGCGC
GCTTTTGGCT ACACCGCCGA GGAACTGGCG GTCGTGCTCA AGCCGATGTT GCGCGATGGG
TTGGAGCCGG TCGGCTCTAT GGGTGATGAT ACGCCAACCG CAGTGCTCGC CGATCGCCCG
CGCCCGCTGT ACAATTATTT CAAGCAGCGC TTTGCCGAAG TGACGAACCC GCCGATCGAC
CCGATCCGCG AGGAACTGGT GATGTCCCTC TCGTTCAGTC TTGGTCGGCG CGGGAACCTG
TTGCTCGAGA CGCCAGAACA CGCGCACCTG CTGCGCCTTT CCAGCCCGGT GCTGAATAAT
GAGCACCTGG CGATGCTGCG CAATATCAGC GATCCGGCGT TCGCCACAGC AACGCTGGAC
GCGACGTTTG TGGCGGACGA TGGCGTCCAT GGGATGATTG CAGCGCTCGA CCGTCTTTGT
CGCGCGGCGG AAGAAGCAAT TGCCGCCGAT AAGGTCATTC TGATCATCAG TGATCGCGGC
GTTGATGCGT ATCGCGCGCC GATCCCGGCG CTTCTGGCGC TTGGTGCGGT GCATCAGCAT
CTCATCCGCA CCGGTCTGCG CACGTCGGTG AGCCTGGTCG TCGAAAGCGG CGAACCGCGT
GAGGTCCATC ATCTGGCGTG TCTGGTCGGC ATGGGCGCCG AGGCGGTCAA TCCCTATCTG
GCGCTCGCAA CCGTGCGCGC GCTCGCCGTC GAACGCGATG AGGTGCGCGG CAAAGCCGCC
GAAACGCCCG ATCGCCGCGC CGCTGGCGAG CTGGCCGATG AAGCCGAGCA GAACTATATC
CATGCTCTCG AAAAAGGGCT GCTCAAGGTG ATGTCCAAGA TGGGCATCTC GACCGTCGAT
AGTTACTGTG GCGCGCAGAT ATTTGAGGCG GTCGGTCTGG CAGATGAGGT GATCGAACGC
TGTTTTGCGG GCGTGTCGTC CCATCTGGGC GGGCATAGCT TCCGTAAACT GGCTGCCGAT
GTGCTCGAAC ATCACGAGGC GGCGTTCTCC AATCGCCTGC CGGCGCTCGC CGGTCGCTCG
TCGCTGCCAC ATCCGGGGTA TTACAAGTTC AAAAAGGATG GTGAATATCA CACCTTCTCG
CCAGCCGTCG TCCATGCGCT GCAACGCGCT GCCAACGGCG GCAGTTATGC CGATTACCTG
GCGTACAGCA AACTGGTGCA TAACCGTCCG CCGGTCGAAC TGCGCGATCT GCTCGACATT
GTGCCGCTGC AACCGATCCC TGTCGATGAG GTGGAGCCGA TCGAGGCAAT TGTGCGTCGC
TTCTCGACGG CTGCTATGTC GCATGGGTCG ACGAGCATCG AAGCGCACGA AACACTGGCG
ATTGCGATGA ACCGTCTTGG CGGCATGAGC AACTGTGGCG AAGGCGGCGA GGACCCGGAG
CGCTACCGTG ACGAACGTAA CAGCACGATC AAACAGGTTG CGTCCGGTCG CTTCGGCGTG
ACCCCGGCGT ACCTGGCGTC GGCGCTGGAA TTGCAGATCA AGATGGCGCA GGGGTCCAAG
CCGGGTGAAG GCGGTCAGAT TCCGGGCATC AAGGTCTCGG AAGAGATTGC GCGTATCCGG
CATACGACGC CGGGCGTGAC GCTGATCTCG CCGCCGCCGC ACCACGATAT CTATAGCATC
GAGGACCTGG CGCAACTGAT CTATGACCTG AAGCAGGCGA ATCCGCGCGC GGCAGTGTCG
GTCAAACTGG TTGCCGAAGC GGGCGTGGGC ACGATTGCCG CTGGCGTCGC CAAAGGCGGT
GCGGATGTTA TTCACATTTC CGGGCATTCG GGCGGCACCG GTGCGTCACC GCTGTCGTCG
ATCAAGAACG CCGGGATCAA CTGGGAAATC GGGCTTGCCG AGACGCAACA GACCCTGGTG
CTCAACGGGC TGCGCGGGCG GGTGCGGCTG CGCGTTGATG GCGGGTTCAA AACCGGGCGC
GACGTCGTGT TGGCGGCATT GCTCGGCGCT GACGAGTTTT CGTTTGGCAC GGCGGCGCTT
GTTGCCGAAG GATGCGTCAT GGCGCGCACA TGTCACACGA ACAACTGCCC GGTCGGTGTC
GCCACACAGC GTTCTGATCT GCGCGCGAAG TTTCCCGGCA AGCCGGAGGA TGTCGTCAAT
TTCTTCCGTC ACGTGGCGCA GGAAGTGCGT GAAATCCTTG CATCGCTCGG CGCGCGTTCG
CTCGACGATA TTATCGGGCG CACCGACCTG CTGCGTCAGG TTCCACGTGG TCATCCCGGC
GCGGATGCGC TCAATCTGGC GCCGCTGCTG GCGCGTTTTG ACCGTCCTGG CGATCCGATC
CGAAATGTGC AACCGTGGAA CGGGCTGATC AATGTCGGTG CACTGAACCG GCGGTTGCTC
GATGATGCGT CACGCGCGCT CGATTATCAG TTGCACGTGG AACTGCACTA CCCGATCACC
AATGTGGATC GCACGGTTGG CGCAACGCTT TCGGGCGAAA TCGGGCGACG GTTCGGTGAG
GCGGGTCTGC CGGAGGGGAT GATTACGGTC AGTTTTCGCG GCAGCGCCGG GCAGAGTTTT
GCCGCCTTCC TCGCGCCTGG CGTCCGCATG GTGATCGATG GCGAGTGCAA CGACTACGTC
GGCAAGGGGA TGGCGGGCGG CGAGATCGTT GTGCGCCCGC TGCCACAGGC GCGCTACCCG
TGGCACGAAA GCACAATCAT CGGCAACACC TGTCTCTACG GCGCTACCGG AGGTACGCTC
TTCGCCGCCG GTCGTGCCGG TGAACGTTTC GCCGTGCGCA ACTCAGGCGC AGTGGCAGTC
GTCGAGGGGG TCGGCGATCA CGGGTGTGAG TATATGACCG GCGGCGTTGT GCTGGTCATT
GGTCCCACCG GGCGCAACTT CGCAGCCGGC ATGAGCGGCG GCATCGCCTA CGTCTACGAT
GAGCATGGGA CGTTTCCGTC GCGTTGTAAC ACTGAAATGG TGACGCTCAA CATGCTCGAC
CCGGCGGACG AAGACAATGT GCGCGCGCTG CTGGTGCGCC ACGTCGAACT GACCGGCAGC
CCGCATGCGG CGTCGCTGCT GGAACGCTGG GAAGTGGCTC GCGGCGCCTT CTGGCGCATT
CAACCGCGCG GTTTGGAGAC GGTGCGGATG CCGAAGGCGC TCCTCCGTGT GCGCGAACGC
ACCCTCGGTG TGCATCGGTA G
|
|---|
| Protein sequence | MDQLKQPEMR GLYDPRFEHD ACGIGFVARL SGEPSHTILA YALTAVGRMA HRGGVAADGK
SGDGAGVLTQ IPRAFFAREL AIRGVRYPVE DLAVGMFFLP QHEGHRSTAR GIVEQILAQY
GMALLAWRPV PVNLDALGDS ARESCPVIEQ ALIARPPHNH TAPNAYERAL YLARRTIEAE
ARAHRLEGFS IPSLSSRTLV YKGLLVAPAL PEFYDDLHDP LYETAIALYH QRYSTNTFPT
WERAQPFRML SHNGEINTLR GNITWMQARE AEWRRAAAAA QQSRLIEASI DGDPLAMALS
AAMIGPVVDT SGSDSAMLDN VLELLVMGGR DIRHSLTMLV PEAWERVHDM EPPRRAFYQY
HAGMMEPWDG PAALAFCDGQ VVGLALDRNG LRPARYLLTD DGLVVCGSEV GAVSIDESRV
IRKGKVGPGQ MIAADLRAGR FEENDDIRSA LAARQPYAEW LKRHMRVLAP AGAPRVSEPD
EPESRSARES KSALLGELQR AFGYTAEELA VVLKPMLRDG LEPVGSMGDD TPTAVLADRP
RPLYNYFKQR FAEVTNPPID PIREELVMSL SFSLGRRGNL LLETPEHAHL LRLSSPVLNN
EHLAMLRNIS DPAFATATLD ATFVADDGVH GMIAALDRLC RAAEEAIAAD KVILIISDRG
VDAYRAPIPA LLALGAVHQH LIRTGLRTSV SLVVESGEPR EVHHLACLVG MGAEAVNPYL
ALATVRALAV ERDEVRGKAA ETPDRRAAGE LADEAEQNYI HALEKGLLKV MSKMGISTVD
SYCGAQIFEA VGLADEVIER CFAGVSSHLG GHSFRKLAAD VLEHHEAAFS NRLPALAGRS
SLPHPGYYKF KKDGEYHTFS PAVVHALQRA ANGGSYADYL AYSKLVHNRP PVELRDLLDI
VPLQPIPVDE VEPIEAIVRR FSTAAMSHGS TSIEAHETLA IAMNRLGGMS NCGEGGEDPE
RYRDERNSTI KQVASGRFGV TPAYLASALE LQIKMAQGSK PGEGGQIPGI KVSEEIARIR
HTTPGVTLIS PPPHHDIYSI EDLAQLIYDL KQANPRAAVS VKLVAEAGVG TIAAGVAKGG
ADVIHISGHS GGTGASPLSS IKNAGINWEI GLAETQQTLV LNGLRGRVRL RVDGGFKTGR
DVVLAALLGA DEFSFGTAAL VAEGCVMART CHTNNCPVGV ATQRSDLRAK FPGKPEDVVN
FFRHVAQEVR EILASLGARS LDDIIGRTDL LRQVPRGHPG ADALNLAPLL ARFDRPGDPI
RNVQPWNGLI NVGALNRRLL DDASRALDYQ LHVELHYPIT NVDRTVGATL SGEIGRRFGE
AGLPEGMITV SFRGSAGQSF AAFLAPGVRM VIDGECNDYV GKGMAGGEIV VRPLPQARYP
WHESTIIGNT CLYGATGGTL FAAGRAGERF AVRNSGAVAV VEGVGDHGCE YMTGGVVLVI
GPTGRNFAAG MSGGIAYVYD EHGTFPSRCN TEMVTLNMLD PADEDNVRAL LVRHVELTGS
PHAASLLERW EVARGAFWRI QPRGLETVRM PKALLRVRER TLGVHR
|
|---|
| |