| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1898 |
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| Symbol | |
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| ID | 5539376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2439142 |
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| End bp | 2441691 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640894035 |
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| Product | alanine racemase |
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| Protein accession | YP_001432006 |
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| Protein GI | 156741877 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase
[COG0787] Alanine racemase |
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| TIGRFAM ID | [TIGR00492] alanine racemase
[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0368912 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACACA CCGGTATGAT TGACCTCGAC GATCTCCTGG CGGTCGGCGG ACGATTGACA
GCGCCTCCGG TTACGCGCCG CTTTACCGGT TTTTCGTATG ACTCGCGTCT GACGGGCGTG
GGCGAATTGT TCCTTGCGTT GCGCACTCCG CGCGACGATG GGCATGCCTA CATCACCGAC
GCGCTGGCAT CTGGCGCTGC CGGCATCGTC TGTGCGACGC CGCCGACGGA GAGCGCCAAC
GCAACGGTCA TCATCGCCGA CGATCCGGCG TTGCTCGCGG CGCGTTGGGC TGCGGTGCGC
TTGCGCCAGG TTGCGCCGCT GGTCGTTGGA GTGACCGGCA GCGTCGGCAA AACTTCGACA
ACCCGCGCCA TCGCTGCGGT TCTGGCAGGC ATCGCGCCAA CCTTTCGCAG TCGCCGCAGT
TTCAATTCGC TGATCGGATT GCCGGTATCG CTCGCGCGCC TCCAGGACGA TCACCGCTTC
GCGGTGCTGG AATACGGAAC GGCGTATCCG GGCGAACTCC GGCGCCTGAC GACGCTGTTT
CCGCCTCAGA TAGCGGTCGT GACCTCTGCC AGCCCGATGC GTTTATCGGC ATTCGGCTCG
GTGGCGGGGC TAACGCGCGA GTTTGGCGCG CTGGTTGAGG CGCTGCCTGC CGATGGTTGG
GCAGTGCTCA ACGGCGATGA TCCGACAGTG GCGGCGCTGC GCGCGGTGAC GCTGGCGCAA
GTGCTGACAT TCGGCGCCGG CGGAGGGTGT GATCTGCGCG CAGAGACGCT TCGGTTCGGT
CTCGACGGCA CACAGGTGCG CCTGTCCTAC GGCGGCGCAT CGGTTGATGC CGCCATTCCG
CTGCTTGGCG AACCGGCAGT CGGCGCAGCG TTGGCGGCAG TCGGCGTGGG GCTGGCGTGC
GGAATGAGTC TGGAACAGGC GGCTGCGCGG CTGGCGCACA TCGAGCCGCC TGCCGGTCGT
CTGCGTCCGC ATCCGGCGCG CAACGGCGCG ATACTGCTCG ACGACACGGT CGGCGCAGAA
CCGGCGGCGA TGCTGGCGGC GCTGCGCACC CTGGCGGCGC TCCCGGCGCG CCGCCGGATC
GCGGTGCTCG GCGATCTTCC TGCCGATAGT GATGATCCCC GCAATGAAAA AAACGTCTGC
ACCGCCATCG GAACCCTTGC TGCGCAGGTC GCCGATGTGT TGATCTGGAA AGGGGACGCC
GGAACTTCGG TCATCCACGC GGCGCGGCAG ATTCGTCCCG ACCTGCCGGC GACTATCGTA
CACACGATTG CGGCGGCGCT CGAAGCCGTG CCTTCCGACA CTGGCGAAGG CGACCTGATA
CTGGTGTGCG GCGGCGCAGC CGCGCGCCTG GAACGCCTGG TCGCCGCGCT CGTCGCTCCT
TCAGTGAATG TCGCGCAGGC GCTGGTGCGC CAGGATGCCG GTTGGCGCGC CGCGCGCATC
GCCGACCCCG CCCGGCCAAC GTGGGTGCGC GTCGATCTGG ACGCGATCCG CGACAATGTG
CGCGCGCTGC GCGCGATTGC CGGCGTGCCG CTCATGGCAG TCCTCAAGGC GGATGCCTAC
GGTCACGGCG CGGTGCGTGC CGCGCGCGCG GCCCTGGCCG GCGGCGCAAT GGCGCTGGCA
GTGGCGACGC TTGGCGAGGC GCGGACGCTG CGGGAAGCCG GAATTGGCGC ACCCATTCTG
GCGCTCGGCT ACACGCCGCC ATGGCAGGTG GCGCAGGCGG CGCGCCTGGG AATCGTGCTG
ACGGTCTTCG ACCCAGACAC GGCGCGCGCG TGTGCGGCTG CGGCAGCGAT TGGATTGAAC
GTTACGATGC ACGTCGAGGT GGATACCGGC ATGGCGCGCA CCGGAGTGAG CGTCGAGGAG
TTGGGACCAT TTTTGCGGTT GCTCACCGAT CTGCCCGGTG TGCGCGTCGA GGGGTTGTAC
ACCCATTTTG CCGATGCCGA CGCTGCCGAT CTGAGCGCCG CAGAAGCGCA ACTTCGCCGC
TTTTGCGCAA CGCTGGACGC GATCACGTCT GCCGGATTGC GCCCGCCAAT AGTTCACGCT
GCCAACAGCG CGGCACTGTT GCGCCTGCCT GGGGCGCGGT TCGATATGGT GCGCCCCGGT
ATCGCGTGCT ATGGGCTGGC GCCGTCACCA CACACGCCAC TGCCACCAAC ACTGCGACCC
GCGCTTTCGT TCCATGCCGA GGTGGCGCAG GTGCGTGATC TTCCGCCGGG AGCGCCGGTG
TCGTATGGCG GAACATTCGT CACCCGGCGC GCCTCCCGCA TAGCCACAAT CCCGGTCGGA
TACGCTGACG GTTTGCGCCG GGCGCCGGCA TGGCGCGAGG TTCTGGTGCG CAGACGGCGC
GCACCGATTG TCGGGCGCAT CTGCATGGAC TATGCGATGA TCGATGTCAC CGACATTCCC
GGCGTTCGGC GCGGCGATCA GGTGACGCTC ATCGGGTCGC AGGGCGACGA ACGGCTCACG
GCGGATGAGA TTGCCGGATG GCTGGGAACG ATCAGTTATG ATGTGGTGGC AACCATTCTG
CCGCGCGTGC CGCGAGAAGT CGGAGAATAA
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| Protein sequence | MIHTGMIDLD DLLAVGGRLT APPVTRRFTG FSYDSRLTGV GELFLALRTP RDDGHAYITD
ALASGAAGIV CATPPTESAN ATVIIADDPA LLAARWAAVR LRQVAPLVVG VTGSVGKTST
TRAIAAVLAG IAPTFRSRRS FNSLIGLPVS LARLQDDHRF AVLEYGTAYP GELRRLTTLF
PPQIAVVTSA SPMRLSAFGS VAGLTREFGA LVEALPADGW AVLNGDDPTV AALRAVTLAQ
VLTFGAGGGC DLRAETLRFG LDGTQVRLSY GGASVDAAIP LLGEPAVGAA LAAVGVGLAC
GMSLEQAAAR LAHIEPPAGR LRPHPARNGA ILLDDTVGAE PAAMLAALRT LAALPARRRI
AVLGDLPADS DDPRNEKNVC TAIGTLAAQV ADVLIWKGDA GTSVIHAARQ IRPDLPATIV
HTIAAALEAV PSDTGEGDLI LVCGGAAARL ERLVAALVAP SVNVAQALVR QDAGWRAARI
ADPARPTWVR VDLDAIRDNV RALRAIAGVP LMAVLKADAY GHGAVRAARA ALAGGAMALA
VATLGEARTL REAGIGAPIL ALGYTPPWQV AQAARLGIVL TVFDPDTARA CAAAAAIGLN
VTMHVEVDTG MARTGVSVEE LGPFLRLLTD LPGVRVEGLY THFADADAAD LSAAEAQLRR
FCATLDAITS AGLRPPIVHA ANSAALLRLP GARFDMVRPG IACYGLAPSP HTPLPPTLRP
ALSFHAEVAQ VRDLPPGAPV SYGGTFVTRR ASRIATIPVG YADGLRRAPA WREVLVRRRR
APIVGRICMD YAMIDVTDIP GVRRGDQVTL IGSQGDERLT ADEIAGWLGT ISYDVVATIL
PRVPREVGE
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