Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1896 |
Symbol | |
ID | 5539374 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2437646 |
End bp | 2438359 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640894033 |
Product | ABC transporter related |
Protein accession | YP_001432004 |
Protein GI | 156741875 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.02479 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACTTC TCGAACTCAA AAACGTCCAT ACGTACTACG GCAATATCCA TGCGCTTAAG GGTATCTCCC TCGTTGTGGA AGAGGGTGAG ATCGTGACGC TGATCGGCTC GAATGGGGCC GGCAAGAGCA CGACGCTGCG CACGATCTCA GGTCTATTGA AACCCAGGCA AGGCGAGATC CTCTTCAAGG GCGAACGGAT TGATCACCTG CCGCCGCACA AGATTGTCGA GATGGGAGTC ATTCAGGCGC CGGAAGGGCG CCGCATCTTT CCACGCCTGA CGGTGCGCGA GAACCTGGAG ATCGGCGCCT TTCTCCGCAA GGATAAAGCC GAGATCGCCA GGGATATGGA ACGAGTGTTC CAACTCTTTC CGCGTTTGTA CGAGCGCCTC AACCAGCGCG GCGGTACGCT CTCTGGCGGT GAACAGCAGA TGTTGGCAAT CGGGCGGGCA TTGATGGGCC GTCCGCGTGT GCTCCTCCTC GACGAACCGT CGATGGGTCT CGCGCCGGTG CTGGTCGAGC AGATCTTCAG CATCATCGGC GACATCAATG CCCAGGGCAC GACGATCCTG CTCGTCGAGC AGAATGCGCT GATGGCGCTG GCAATCGCTC ATCGCGGCTA TGTGCTCCAG ACCGGGGAGA TTGTGCTGGC AGACACTGCC CATGCGCTAC GTGAAAATAA ACTCGTCCAG CACGCCTATC TTGGCGTCGG GTAA
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Protein sequence | MPLLELKNVH TYYGNIHALK GISLVVEEGE IVTLIGSNGA GKSTTLRTIS GLLKPRQGEI LFKGERIDHL PPHKIVEMGV IQAPEGRRIF PRLTVRENLE IGAFLRKDKA EIARDMERVF QLFPRLYERL NQRGGTLSGG EQQMLAIGRA LMGRPRVLLL DEPSMGLAPV LVEQIFSIIG DINAQGTTIL LVEQNALMAL AIAHRGYVLQ TGEIVLADTA HALRENKLVQ HAYLGVG
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