| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1892 |
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| Symbol | |
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| ID | 5539370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2432692 |
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| End bp | 2433960 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894029 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001432000 |
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| Protein GI | 156741871 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.130266 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0268601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAAC GTGCCAGTGC GTTTCTCATC TTCGCGTTGC TGGGTGCGCT GCTGGCCGCG
TGTGGCGGCG GCACGCCTCC CGCAGCGCCG GCGCCAACCA CCCCGCCAAC AGGAGCAACG
GCGGCGCCGG CGCCAACCAC CCCGCCGGCC GCCGGTATGA CGGGCACAAT CAAGATCGCC
ACGCAAAGCC CGCTCTCCGG TCCGCAGGCG GCGCTCGGCG TCGGTATTCG CAATGGCGCC
GAACTCGGGC TTGAGCAACT TGGCAAGACG CTGACCGATA TGGGCTTTAC GGTCGAACTG
GCGCCGTTCG ATGACCAGGC GAAGCCAGAG GTTGGTTCAG CCAATGCCAA GAATATCATT
TCCGACAATG ACATCCTCTG CCTGGTCGGT CACCTGAATT CGGGTGTGGC GCTCGCCTCG
CTGCCCGATT ATCAGTCCGC CAGCCTGGTG ATGGTCTCGC CTGCCAATAC CAACCCGAAG
ATCACCGAGA GCGGCTACCC GAACGCCTTC CGCATCGTCG GTCGCGATGA TGTGCAGGGC
GCCGTGGGTG AGGAGTTTGC CCGCACCGAA CTGAACATCA AGAGTGTTTA CATCATCCAC
GACAAGACTG ACTACGGTCA GGGCGTGGCG GAGTTCTTCC GCCAGAACGC TGAGAAGAAC
GGCATCCAGG TGCTGGGCTT CGAAGGCACC GAGGAGAAGT CGGTGTTCGA CTCGATCCTG
ACTCCCATCC AGGCGGCGAA CCCGGATCTG ATCTACTTCG GCGGCATTTA CGACCAGGCG
GCGCCACTGT TCAAGCAGGC GCGCGATCGC GGTATCCAGG CGGCGTTTCT GGGACCGGAC
GGTCTCGACT CGCCGGTTCT GCTGGAAGTG GCAGGGGACG CGGTGAAGGG TATGTACTAT
ACTTCGGTCG CTGCGCCGGT CAGTCAGTTC CCTGATGCGG CGAAGTTTGC CGAGGATTAC
CAGGCGAAGT ACAATGAAGC CGCGCCGCCG TTCTCGGCGC AGGCGTTTGA TGCGGCCGGC
GTCTGCATTC AGGCGATTGC CAATGCCGCT AAGTCTGCCA ACGGCAAGCC GACCCGCGCG
CAGGTGCTCG AAGCGATGAA GACCCTCGGC GCCTACAAGG GGATCACCGG TTCGTATGAG
TTCAACGCCA AAGGCGACCC GGTGAAGGGC ACCTACTTCG TGCTCCAGGT CAGCACCGAA
TCAGGCGCTC CGGCGGATGT CTGGAATAAG AATGCGGTCG TTAAGCGCCT CGAAATTGCA
GCGCCGTAA
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| Protein sequence | MMKRASAFLI FALLGALLAA CGGGTPPAAP APTTPPTGAT AAPAPTTPPA AGMTGTIKIA
TQSPLSGPQA ALGVGIRNGA ELGLEQLGKT LTDMGFTVEL APFDDQAKPE VGSANAKNII
SDNDILCLVG HLNSGVALAS LPDYQSASLV MVSPANTNPK ITESGYPNAF RIVGRDDVQG
AVGEEFARTE LNIKSVYIIH DKTDYGQGVA EFFRQNAEKN GIQVLGFEGT EEKSVFDSIL
TPIQAANPDL IYFGGIYDQA APLFKQARDR GIQAAFLGPD GLDSPVLLEV AGDAVKGMYY
TSVAAPVSQF PDAAKFAEDY QAKYNEAAPP FSAQAFDAAG VCIQAIANAA KSANGKPTRA
QVLEAMKTLG AYKGITGSYE FNAKGDPVKG TYFVLQVSTE SGAPADVWNK NAVVKRLEIA
AP
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