| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1888 |
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| Symbol | |
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| ID | 5539366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2427697 |
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| End bp | 2428953 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894025 |
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| Product | acyl-CoA dehydrogenase domain-containing protein |
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| Protein accession | YP_001431996 |
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| Protein GI | 156741867 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.421707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00545764 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCGATT TTGAGATACC AGCCCCGATC AAGCGCCAGG TGCAGTTTAT TACGATGCTC
GGCGAGCAGG TGATGCGCCC GGTTGCGCGC TACTACGATG AGCACGAAAC CGAGCGCCCA
TGGGACTACA TCAACCTGAT CTGGCCCACG ATCCGCGAGC GCGGCGGGCG CTCGTTCTCG
GTCGACGATG GCAAAGAGCA GACGGATAAG GAGGGCAAGC CGCGCCCGCG CATCGGCTAC
CTGATGCTGG CGCACGTCGT CGAGGCGCTC TCGTGGGGCG ATGCCGGGTT GTACCTCTGC
ACTCCCGGCG GCGCGCTTGG CGGCGCGGCA GTTGATGCAA CCGGCACGCC GGAGCAGAAG
GAGCGCTTCC TGAAGCGCTT CGGCGAGGGT GAGCCAAAAT GGGCGGCAAT GGCGATGACC
GAGCCGCACT GCGGTTCGGA TACCGCCGCC ATCCGCACGA CGGCGCGCCT CTCTGAAGAC
GGCACGGAGT GGATCCTGAA CGGCGAGAAG ATTTTCGTCA CCGGCGGATT GATGGCGGCC
AAAGAGTCGC GTGGCTTTGT CGTCGTGTGG GCAACGGTCG ATCCATCGGC TGGACGCGCC
GGGATGAAGC CGTTCGTTGT CGAAGCCGGT ACGCCGGGGA TGACCGTCAC GAAACTGGAG
CACAAACACG GCATCCGGGC GTCGGACACG GCGGCGATTG TGTTCAACGA TTGTCGCATT
CCGTATGATA ATATCCTTGG CAGCCCCGAA GTCGTGAAAG GTGATACGGA ACACAAGGGG
TTCAAGGGTG CGATGAAGAC ATTCGACGCC ACCCGCCCGC TGGTGGCGGC GTCGGCGCTC
GGTATTGCGC GCGCTTCGCT CGAGTTTACT GCCGCATACC TGAAAGAGCG CGGGGTGAAG
GTGCGTTATG GCGTCGCTCC TCATCTGCAA ACCGCCGTCG AGCGCGACCT GATCCACATG
GAGATGCAGC ATCGCGCCGG CTGGCTCCTG GTGCTGAAAG CCGTCACCAA GATGGACGCA
GGCGAGGAGA ATGCGCTCGA AGCGTCGATG GCGAAGGTCA AGGCCGGTCA GGTGGCGACG
TATGTCTCGC AAAAAGCGGT CGAGTTGCTC GGTCCCGAAG GGTATTCGTG CAAACTGCTG
GTCGAAAAAT GGATGCGCGA TGCCCGTATC AACGATATCT ACGAGGGTAC CGGGCAGATC
AATCGCCTGA TCGTTGCGCG ACGACTGCTC GGCTATACGA GCCGCGAGTT GCGCTGA
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| Protein sequence | MIDFEIPAPI KRQVQFITML GEQVMRPVAR YYDEHETERP WDYINLIWPT IRERGGRSFS
VDDGKEQTDK EGKPRPRIGY LMLAHVVEAL SWGDAGLYLC TPGGALGGAA VDATGTPEQK
ERFLKRFGEG EPKWAAMAMT EPHCGSDTAA IRTTARLSED GTEWILNGEK IFVTGGLMAA
KESRGFVVVW ATVDPSAGRA GMKPFVVEAG TPGMTVTKLE HKHGIRASDT AAIVFNDCRI
PYDNILGSPE VVKGDTEHKG FKGAMKTFDA TRPLVAASAL GIARASLEFT AAYLKERGVK
VRYGVAPHLQ TAVERDLIHM EMQHRAGWLL VLKAVTKMDA GEENALEASM AKVKAGQVAT
YVSQKAVELL GPEGYSCKLL VEKWMRDARI NDIYEGTGQI NRLIVARRLL GYTSRELR
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