| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1882 |
|---|
| Symbol | |
|---|
| ID | 5539360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2416272 |
|---|
| End bp | 2417993 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640894019 |
|---|
| Product | ASPIC/UnbV domain-containing protein |
|---|
| Protein accession | YP_001431990 |
|---|
| Protein GI | 156741861 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0826925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGTG AAGCAGGCAG GGGACGCCTG CGTGTGCCTG TGTGCAGTCC ACGGTTGGGT
GCGCTGTTGT GGTGCATGGT CGCGGCGCTG ATGGCAGGAT GCTCTGCGGC GCCGGATGAT
CCTGCCGCAG CATCCCCTGC GCCGCGCGTC GCGCCTGTGC GAGTCGAAGT CGTGCCGTTG
CGCGACTCCG ATGCGCCATG TGGTTTGTTC ATCGCGCATG ATCTGCCGCA TACGACCCGC
AGCGCCACGC GCATCCCAGC CCTCTATGAG AGCAATGGCG CCGGGCTTGC CATCGGCGAC
CTCGATGGCG ACGGCGATCA GGATATTGTG CTGGCGAACC TGGCAGGTGC GAACACGCTG
CTCTGGAATG AGGGCGACCT CCGTTTTCGC GCCGAGCCGC TTGGTGAGGG GCGTGTCCGT
GGGTTGACGA TGGTCGATGT CGATGGCGAT GGATGGCTCG ATATCGTCGG AACCCGTCAG
TTCGAGAAGC CGGTCTGGTG GCGCAACACG GGTGTGGATG GCGCCGGACG CTTCGAGGAA
CGGGCGCTTC CCGATGTGCA TAACTGGTTC TATGCGCATA CCTGGGCGGA TCTCGATGGC
GATGGCGATC TCGATCTGAT CGCCGCTTCG TATGATACGG AAATCCAGAA GCAACAAGGA
CTGATTTTTC AGTATCGCGG CGGTGGTGTG GGTGTGTTCG TCTACGAACG GCGCGGGGCG
GCGTATGTGG CGCATCGTCT GACCGATCAG GCCGATGCGC TGGCGATTGC GCTGCCCGAC
TTGAATGGCG ATGGTCGCCG TGATATTTGG GTCGCCAATG ATTTCAACCG TCCAGACGGC
GCCTGGTTGC AGGGCGGCGG CATCGGCGAA TGGACGCCCT TTGCGCTGCC GGAACGGATC
AGCGAAAACC CGATGAGCCT TGACGTGGGT GATGTCGATA ACGATGGCAC GTCGGAATTG
TTTGCCGCCG ATATGAAACC GGTGCGCAAA GACGAGGCGA CGATGGCGCG CTGGCTTCCT
GCGATGCGTC GCCTGACGAA ACCGTTGACG AGCGCCGATC CGCAGTATGC CGAGAATATG
CTGCTGGTGC GCGGCGCCGA TGGACGCTGG CGCAACGAAG CCTACGAGCG CAGGATCGAT
GCGACTGGTT GGAGTTGGTC TGGTGTTTTC GGCGATCTCG ACCGCGATGG GTGGCTCGAT
CTCTATGTCG TCAATGGGAT GATTGCAGCC GGACTGCTCG ATTATCTGCC CGGCAGCGAG
TTGGTCGAAG AAAATGTTGT TTTGCGCAAC ACTGGCAACG GGCGCTTCAC CATGGCGCCG
GAATGGGGGC TTGGCGTCTC GCGCAGCGGG CGTGGCATGG GCATGGCCGA TCTCGACGGC
GACGGCGATC TGGATATTGT GGTCAATAAC CTGATGACTC CGGCGCAACT CTTCGAGAAT
CGGCTTTGTG GCGGCGCGAG TCTCCTGGTT GATCTGCGGA TGCCAGGGAG CGCCAATACC
CACGCGCCTG GCGCAGAACT ATCGTTGAAA ACCAGTGCAG GTGCATTCTA CCGTGATGTG
CGCACCACCT CCGGGTATCT GTCGGGTGCA ACGTCGCAGG TGCATTTTGG TTTTCCTGCC
CATGCCACGC TCGAACGGCT CGAGGTGCGC TGGCCCGATG GCGCTGTTTC GGTGATCGAG
TCGCCGCCGC GCCGGCATCG GCTCCTGATT GTTCGCCCAT GA
|
|---|
| Protein sequence | MAREAGRGRL RVPVCSPRLG ALLWCMVAAL MAGCSAAPDD PAAASPAPRV APVRVEVVPL
RDSDAPCGLF IAHDLPHTTR SATRIPALYE SNGAGLAIGD LDGDGDQDIV LANLAGANTL
LWNEGDLRFR AEPLGEGRVR GLTMVDVDGD GWLDIVGTRQ FEKPVWWRNT GVDGAGRFEE
RALPDVHNWF YAHTWADLDG DGDLDLIAAS YDTEIQKQQG LIFQYRGGGV GVFVYERRGA
AYVAHRLTDQ ADALAIALPD LNGDGRRDIW VANDFNRPDG AWLQGGGIGE WTPFALPERI
SENPMSLDVG DVDNDGTSEL FAADMKPVRK DEATMARWLP AMRRLTKPLT SADPQYAENM
LLVRGADGRW RNEAYERRID ATGWSWSGVF GDLDRDGWLD LYVVNGMIAA GLLDYLPGSE
LVEENVVLRN TGNGRFTMAP EWGLGVSRSG RGMGMADLDG DGDLDIVVNN LMTPAQLFEN
RLCGGASLLV DLRMPGSANT HAPGAELSLK TSAGAFYRDV RTTSGYLSGA TSQVHFGFPA
HATLERLEVR WPDGAVSVIE SPPRRHRLLI VRP
|
|---|
| |