| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1859 |
|---|
| Symbol | |
|---|
| ID | 5539337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2374967 |
|---|
| End bp | 2376616 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640893997 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_001431968 |
|---|
| Protein GI | 156741839 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.909827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATAT GTAAGTCCTT CCAGCACCAT TCAGAGGCCA TGATCCCAGA CACCATCCTC
TCCGGGGCAA CAATTTATCC GATGGTCACC GCACCAATGA CGTGCGGCGC CATCGCCATT
GGCGGCGACC GCATTCTTGC AGCAGGACCG GCGGACGACA TCGAGGCGCT TGCGGGAGCA
TCGACGCGCA CGGTGCGTCT GCCGTCCGAA TACGCTGTCA TTCCGGCGTT TCACGATTCG
CATCAGCACC TGTTGAGTTA TGTGCGCAGC CGCACCCGCG TGGCGCTATG GGATACGACG
AGCATCGCTG CGCTGCTGGA ACGGCTGCGC GCGGAAGCGA TGCGACGACC GCCGGGGGAA
TGGATCGTCG CTGTGGGACA TGACCAGGGG CGACTGACGG AACGCCGCCA TCCGACACGC
GCAGAACTCG ACGCTGCCGT TCCCGGTCAT CCGCTCCTGA TCTATCGCGC CTGCAATCAT
GTGGCGCTGG CGAATTCTGT TGCACTGACG CGCGCCGGCA TCACTGCCGC CACGCCCGAC
CCGCCAGGCG GCCGAATCGA GCGCGACAGT GATGGAAGTC CAACCGGCGT GCTGCTCGAA
GCGGCAATGG CGCTGGCAAT GCATGTGGTC GAAGCGCCTT CCATCGATTG GCACGCCGGC
GTGCGGGATG CAGCACGAGA GTACCACAAA CGCGGCATCG TTGCGATTGG GGAAGCGGCG
CTCGGGCATA TCGCCGGTCT GCATGATCTG AAGATCGTGA ACGACCTCAT CCGCGATGGT
GGTACGGGGC TACGCATGTA TGCACTGGCA TACGGCGCCG TGGCAGAAGC GATGCTCCAG
GCGGCGGAAG CGGGCGAGTC GCAGGAGGCC TGGCGCAACG ACGCCTGGTT GCGTTTCGGG
GCGATCAAGT ATTTCGCCGA CGGGACACTC GGCGGCGGGA CGGCGTGGCT CAGCGAGGGA
TATGGCGATG AGCCGGGCAA CTCTGGTTTT CCACTCGTGC CAGCAGAAGA ACTCGATGCG
CGGGTGTTGC GCGCGCATCG CGCCGGATTC CAGGTTGCCA TCCACGCCAT TGGCGATGCA
GCCGTGGCAA TGGCGCTCGA TGCGTATGAA CGCGCACTTA CCGCATATCC GCGCGCCAAT
CATCGTCACC GCATCGAGCA CGTCGAAGTT GTGCATGCCG GGTTGCCGGA GCGCTTCGCG
CGCCTGGAGG TGATCGCCGC CATTCAGTCG TGCTTCACCT GGTGGGAAGA AGGCGACGTG
ACCAGGTTAG GACCCGGGCT GGCGCCGTGG GGGCACGCCT GGGGCGCCTT GCAACGCGCC
GGGGTCATCC TCGCCAATGG ATCAGATAAC CCGGTGTTGC CAGATTTCGC GCCCCTCCAG
GGGATTGCGG CGGCAGTGAC GCGCAAGGCG CACAATGGTC GCACAATCGC CGCACATCAG
GCAATCGGTT TGATGGATGC GTTACGTAGT TACACCTGGG GCAGTGCGTA TGCCGCCTTC
GCCGAGCATG AGCAGGGCGC GCTGGCGCCG GGCATGTACG CCGATATTGC CGTGCTCGAT
GGCGATCCGC TAACTGTTGA ACCTGAGCGC ATACCGGAAA TTTCCGTCGT CATGACCATT
GCTGGCGGGA AGATTATGTA CGAACAATGA
|
|---|
| Protein sequence | MTICKSFQHH SEAMIPDTIL SGATIYPMVT APMTCGAIAI GGDRILAAGP ADDIEALAGA
STRTVRLPSE YAVIPAFHDS HQHLLSYVRS RTRVALWDTT SIAALLERLR AEAMRRPPGE
WIVAVGHDQG RLTERRHPTR AELDAAVPGH PLLIYRACNH VALANSVALT RAGITAATPD
PPGGRIERDS DGSPTGVLLE AAMALAMHVV EAPSIDWHAG VRDAAREYHK RGIVAIGEAA
LGHIAGLHDL KIVNDLIRDG GTGLRMYALA YGAVAEAMLQ AAEAGESQEA WRNDAWLRFG
AIKYFADGTL GGGTAWLSEG YGDEPGNSGF PLVPAEELDA RVLRAHRAGF QVAIHAIGDA
AVAMALDAYE RALTAYPRAN HRHRIEHVEV VHAGLPERFA RLEVIAAIQS CFTWWEEGDV
TRLGPGLAPW GHAWGALQRA GVILANGSDN PVLPDFAPLQ GIAAAVTRKA HNGRTIAAHQ
AIGLMDALRS YTWGSAYAAF AEHEQGALAP GMYADIAVLD GDPLTVEPER IPEISVVMTI
AGGKIMYEQ
|
|---|
| |