| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1858 |
|---|
| Symbol | |
|---|
| ID | 5539336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2372358 |
|---|
| End bp | 2374970 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640893996 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001431967 |
|---|
| Protein GI | 156741838 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.576802 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACATC CTATGCCGTT GACGCTTCTG AACACATCAC TCCGCTATAT CCTGCGCCAT
CCATGGCAAT TTGGTCTGGC AGTGCTGGGG GTTGCTTTGG GGGTTGCCGT GGTGGTCTCC
ATCGACCTGG CGAACGACAG CGCGCGACGG GCGTTTCTCC TTTCAACGGA GACGTTGACC
GGGCGCGCAA CCCACCGGAT CGTCGGCGGA CCTTCGGGTA TACCGGAAGA AGTCTACCGC
CAGTTACGGA TTGATCTGAA GGTACGTGCA GCGGCGCCAT TGGTGGAGGG GGAAGCTGTT
GCGCCGGATC GCAGCGGATT GACGCTTCGT GTCCTGGGGA TCGACCCGGT TGTGGAAGCG
CCGTTCCGTC CGTGGCTCGC TGGCGCACCC GGCGAGGGCG CGACGCTTGA CCGGACATCC
CCGGCGCAGG AGGGGTGCCA GGGATTTGGG TGTTACGGAT TGCTGATGAC ACGCCCCGGC
GCGGCGCTGC TCTCAGCGGA AACTGCGCGC GAGTTCGGCA TTGCCGGCGG TACGCGCCTG
CCCCTGATGA TCGGCGCAAC GCCGGTCGAA GCGGAAATAG TCGGGCTGTT AGAGCCTGCC
GATGACGCCA GCCGACGCGC GCTCGACGGG CTGTTGATCG TCGATGTGGC GACGGCGCAG
GAATGGATGG GAAGCGTTGG CAGGTTGAGC AGCATCGACC TGATCGTTCC CGAAGGTGCG
GCAGGGGAGG CGCTGCTGCA ACGGATTGCC GCGACGCTTC CTCCCAGCGC GCGCATCGAA
CGCCCTGAGC AACGCAGCAA CGCGATCCAG CAAATGACCG CAGCGTTCGA GTTGAATCTG
TCCGCCCTCA GCCTGCTGGC GCTGGTCGTC GGCATGTTCC TGATCTACAA CACGATGACC
TTCTCGGTGG TGCAGCGGCG CACCATGCTG GGAACGCTCC GCTGCATCGG TGTGGCGCGG
CGGCAGATTT TTGCGCTGGT GCTGGGTGAA GCGTTGCTGA TCGGACTAAT CGGCGCGCTG
GCGGGCCTGG CGCTCGGCAT CGCGCTGGGG CGCGGTCTCG TTGGATTGGT GACGCAAACG
ATCAATGATC TCTACTTCGC GGTCACGGTG CGTTCGGTCG AATTGTCGCC TGGCGTGTTG
TTGAAAGGGT TCGCGCTGGG CGTAGCGGCA ACGCTCGGCG CGGCTGCGGT TCCGGCGACG
GAAGCGACGC TGACCCCGCC GCGCACCGTG CTGCGCCGTT CGTCATATGA AGAACGGATA
CAACGGGCGG TGCGCACCGC CGCGCTCGTC GGCGCGGCGC TACTGGCGGT CGGGCTTGGG
TTACTCGCCG TTCCGGGGCG CAGCCTGACG TTAAGTTTCG GCGGGTTGCT GGCGCTCACC
ATTGGCGCAG CCGCGCTGAC ACCGCTCATC ACGCAAGGTC TCGCCAACAT CGCGCGCCCG
GCGACCGGTC GCGCCTTCGG GCTGCTGGGG CGGATGGCAG CGCGCGACAT TGTAGCGTCG
CTCAGCCGCA CGTCGGTTGC GGTCGCTGCC CTGATGATCG CCGTCTCGGT CACGATTGGC
GTCGGTCTGA TGGTGAGCAG TTTTCGCACA ACGGTCGAGC GCTGGCTGGA AAACACCATC
CGCGCCGATA TTTTCGTCTC CGCGCCAAGC GCGCGCGGCA ACCGTCTTGA TTCGCCGCTG
CCGAACGAAG CGATTGCTCG CATTGTCGAA GCGCCGGGCA TCGAACGCTA CCGCCGCTAC
CGCAGCGCGA CCATCGAGAG CAGCGTCGGT CCGCTGTTGA CCATTGCGCT GGATGTCACC
CCGGCGGATT ACCGGGTCTT CCAGTGGGTT GGCGCTGTCG ATGAACCTGC CGTCTGGCGG
GCGTTCGCCA GCGGTGCGGC GTTGATCTCG GAGCCGCTGG CATACCGCCA CAATCTGCGC
CCTGGCGATA CGCTGACCTT GCTGACCGAC CGCGGCGAGC GGCAGTTCCC AATTGCCGGC
GTCTTCTACG ATTACGGCAG CGACCAAGGC GTGGCGATGA TCGACCTTGC CGTGTACCAG
GCATGGTGGG ATGACGGGGC GCTCTCGTCG CTGGGGGTGT ATGTTGAACC GGGAGTGGAT
GTCGATGAAC TGGTGCGCGA CCTGCGCGCG CGCATGCCGC CTGGTCTGGC GGTCAATATC
GTCTCGAACC GCGGGTTGCG CGAAACCTCA ATGGCGATTT TCGACCGCAC GTTTGCGATC
ACGACCGTCT TGCAACTTCT GGCGACGATC GTGGCATTCA TCGGCATTCT TTCGGCGCTC
ATGGCGCTGC AACTCGAACG GGCGCGCGAG ATGGGGGTGC TGCGCGCCAA CGGCTTGACG
CCGCGCCAGT TGTGGGGGCT GGTCGTCGGG CAGACCGGGT TGATGGGGTT ATTCGCAGGA
GTGCTGGCGA TTCCGGTTGG GGTGATGATG GCGGCAGTGC TGGTCTATGT CATCAACCGT
CGTTCGTTTG GCTGGACGCT TCTTTTCGAG TTGAACGGCG CACTGTTTGC GCAGGCGGTT
GCCGTGGCAG TCGTAGCGGC GCTGCTGGCG GGACTGTACC CGGCGTGGCG CATGGGGCGC
ACCTCACCGG CGCTGGCGTT ACGCGAGGAG TAG
|
|---|
| Protein sequence | MRHPMPLTLL NTSLRYILRH PWQFGLAVLG VALGVAVVVS IDLANDSARR AFLLSTETLT
GRATHRIVGG PSGIPEEVYR QLRIDLKVRA AAPLVEGEAV APDRSGLTLR VLGIDPVVEA
PFRPWLAGAP GEGATLDRTS PAQEGCQGFG CYGLLMTRPG AALLSAETAR EFGIAGGTRL
PLMIGATPVE AEIVGLLEPA DDASRRALDG LLIVDVATAQ EWMGSVGRLS SIDLIVPEGA
AGEALLQRIA ATLPPSARIE RPEQRSNAIQ QMTAAFELNL SALSLLALVV GMFLIYNTMT
FSVVQRRTML GTLRCIGVAR RQIFALVLGE ALLIGLIGAL AGLALGIALG RGLVGLVTQT
INDLYFAVTV RSVELSPGVL LKGFALGVAA TLGAAAVPAT EATLTPPRTV LRRSSYEERI
QRAVRTAALV GAALLAVGLG LLAVPGRSLT LSFGGLLALT IGAAALTPLI TQGLANIARP
ATGRAFGLLG RMAARDIVAS LSRTSVAVAA LMIAVSVTIG VGLMVSSFRT TVERWLENTI
RADIFVSAPS ARGNRLDSPL PNEAIARIVE APGIERYRRY RSATIESSVG PLLTIALDVT
PADYRVFQWV GAVDEPAVWR AFASGAALIS EPLAYRHNLR PGDTLTLLTD RGERQFPIAG
VFYDYGSDQG VAMIDLAVYQ AWWDDGALSS LGVYVEPGVD VDELVRDLRA RMPPGLAVNI
VSNRGLRETS MAIFDRTFAI TTVLQLLATI VAFIGILSAL MALQLERARE MGVLRANGLT
PRQLWGLVVG QTGLMGLFAG VLAIPVGVMM AAVLVYVINR RSFGWTLLFE LNGALFAQAV
AVAVVAALLA GLYPAWRMGR TSPALALREE
|
|---|
| |