| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1856 |
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| Symbol | |
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| ID | 5539334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2370402 |
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| End bp | 2371499 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893994 |
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| Product | anti-sigma-factor antagonist |
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| Protein accession | YP_001431965 |
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| Protein GI | 156741836 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
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| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.616563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCACT TGTTTGCCAC CCTCACTAAC GTCACTGCCC GTAATCCTGA CGATCAGCGT
CGTGGACGCA TCCTGGTCTC CCTGTCGCTC GGTGTTATCG CGCTTTTGTT GAGTGTCGGG
ATGGGATTGA TCCTGCTTCA ACCATCGGTG GGGCGCTTCG GCAACCTTGG GCTGGCGGTG
CTGGTGTTTG CTGTGGCAGC CGTGCTCGGA AAGAAAGGAT TCGTTACCGC AGGCGCATAT
GTTCTGATTG TCGTCAGTGG CATTGGCGCA CTGAGCGGTG TATTCCTCAA CCCAAATTCG
CCCTTCAACA CCTTCTATTT GCTCATCAGC GTTTTGCTGG CCAGCGTCCT GCTCCCTCCG
CGCCAGATAT GGGTGGTCCT TGGAATCTGC CTCGCCGCAG TGGCGGGTGT GCTGGTAAGG
GTTCCCGCCG AAACCCGAAC CGCGATCAAT CTTGATCTGG CGTCCGCCCA TCTCACCATT
CTGCTGATAG TCAGTGCGTT CATTTCCTTC ATTGGAGCGC GCAGTCTGTC GTCGGCGCTG
AAGGATGTCG ATGAGTCTCG TCGGCGCGCC GAAGAAGCGA ACCGACAGAT TGAGGTCGCA
AATGCAACGT TGGAGGCGCA TATTGAAGAG CGAACCGCTG CTTACCGCCG TCTTACCGAC
GAACAACGCG CAGTCGTTGC GCGGTTAGAG GAAAGCCTTC GCGCGCAACA GCACCTGAAC
CAGATGATCG CCGATCTGAC GGTGCCGGTC ATTCCCGTCC GCAACGATAC CCTGGTTATT
CCGCTAATCG GAAGTATCGA TGCCAGCCGG GTCCAGCAGT TGCTGGCTTC GGCGCTTCAG
TCCCTTGAGC GCACCCGCGC GCGCATCCTG ATTATCGATG TGACCGGGGT TGCCGTCATC
GACAGTCACG TCGCGGCGGC GCTGCTCCAG GTGGCGCAGG CAGCGCGTTT GATGGGCGCT
GAAACGATTG TCGCCGGTAT CCGTCCCGAG GTGGCGCAGA CGCTCATCAG TCTGGGCGCC
GATTTGCACA GCATGCGCAC GGCAGCGACT CTGCAATCGG CGCTGGCGTT TACGTTCAAC
GGGGGAGACG TGCAATGA
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| Protein sequence | MTHLFATLTN VTARNPDDQR RGRILVSLSL GVIALLLSVG MGLILLQPSV GRFGNLGLAV
LVFAVAAVLG KKGFVTAGAY VLIVVSGIGA LSGVFLNPNS PFNTFYLLIS VLLASVLLPP
RQIWVVLGIC LAAVAGVLVR VPAETRTAIN LDLASAHLTI LLIVSAFISF IGARSLSSAL
KDVDESRRRA EEANRQIEVA NATLEAHIEE RTAAYRRLTD EQRAVVARLE ESLRAQQHLN
QMIADLTVPV IPVRNDTLVI PLIGSIDASR VQQLLASALQ SLERTRARIL IIDVTGVAVI
DSHVAAALLQ VAQAARLMGA ETIVAGIRPE VAQTLISLGA DLHSMRTAAT LQSALAFTFN
GGDVQ
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