| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1847 |
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| Symbol | |
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| ID | 5539325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2358309 |
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| End bp | 2360648 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893985 |
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| Product | (NiFe) hydrogenase maturation protein HypF |
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| Protein accession | YP_001431956 |
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| Protein GI | 156741827 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0068] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.962683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACACACG CACACTGTAA TGGTTCTGAT CAGAGTCAGA ACATCCGTCG TCGCCTGATG
GTGCGCGGCA TGGTGCAGGG GGTTGGCTTC CGCCCCTTTG TCTACAACCT GGCGCAACGC
CTGGGGTTAG GCGGGTTTGT GCTCAACGAT AGTGACGGCG TGACACTGGA GATCGAAGGT
CCTGCCAGTG CGCTCGACGC CTTCGAGCAG ACGTTGCGCA CATCGCCGCC GCCGCTGGCG
CGGATTGATG CTATCGGCGC TGAACCGGTC GCTTCCCGGG GCGAAACGCA CTTCCGCATC
GAAACCAGCC GTGCCGCAAC TGTGCGCAAC ACCCTGATCT CGCCCGATGT CGCCACTTGC
GACGATTGCC TGCGCGAACT GTTCGACCCT GCCGACCGGC GTTTCGGTTA TCCCTTTATC
AACTGTACCA ACTGCGGTCC GCGTTTCACA ATTGTGCTCG ATGTGCCGTA TGACCGGGCG
CAGACAACAA TGCGCGTCTT TCCGATGTGC CCGGCATGTC GGTCGGAGTA TGACGATCCG
CTCGACCGCC GGTTCCATGC GCAACCCAAT GCTTGTGCCG TTTGTGGTCC GTCACTGGCG
TTTCACTGGT GGTCAACGGA GTTTCGTCCA CGCCTTCCAG TTCATGCGTC ACCGCTCGAT
CAGGCAGCGG CAGCGCTGGC GCAGGGGGCG ATCCTGGCGA TCAAGGGGCT GGGCGGGTAC
CACCTGGCGT GCGATGCGCT CGACTCTGCC GCAGTTGCGC GGTTGCGCGT CCGCAAGCAA
CGCGAAGCCA AACCGTTCGC GCTCATGGCG CCGGACCTTG AGGCAATCCA GCGGTTATGC
TCTGTCAACC CGGACGAGGA AGCGCTTCTC GAATCGCGCC GCCGTCCGAT TGTCCTGCTC
GATGCCCTCC CCAACGTGCC GGTGGCGCCG TCGGTTGCGC CGGGATATGC AACGCTGGGC
ATAATGCTGC CGTATACGCC GCTTCATCAT CTCCTTTTGC GCGCATATGC AAAAGAAGCG
CCGGGTAGAC CGGCGGTATT GGTGATGACG AGCGGCAATC TGAGCGATGA ACCGATTGCC
TACCGCGACG ATGATGCCGT TGCGCGCCTG GCGTCCATCG CTGATGGGAT GCTGACCCAC
AACCGCGACA TTCATATGCG CTGCGATGAC TCGGTGGCGC GCATCGTGGC GGGCGGGGTG
CAACTGCTGC GCCGGTCGCG CGGGTATGCG CCGGAACCAG TGACGCTGAC GCTGCACTTT
CCCCGACCGC TGCTGGCGGT CGGTGGGCAT CTGAAGAATA CGTTCTGCCT GGCGAAAGAG
CATGATGCTT TCCTCAGCCA TCACATCGGC GATCTGGAGA ATCTGGAGAC GTTAACCTCG
TTCCGTGAGG GGGTGCGCCA TTTTGCGCGT CTGTTCGACT GCGAGCCAGA AGTGGTGGCG
TATGATCTGC ATCCCGAATA TCTGGCGACG AAAGAAGCGC TGGCGTCGGA CATTCCGTTG
AAGATCGGCG TACAGCACCA CCATGCGCAC ATCGCCAGCG TCCTGGCGGA GCACGGCATC
GAAGATCCGG TCATTGGCGT AGCGGCGGAT GGCACAGGGT ACGGGATCGA TGGCTCTATC
TGGGGATGCG AGGTGCTGAT CGCCGATCTG CGCGAGTTCA CGCGCTTTGC GCACCTGGCA
TATATCCCGC TGCCTGGTGG CGATGCGGCA GTGCGGCAGG TGTGGCGCAT CGGTGCAACG
TATCTGCAAC GCGCTTTCGG CGATGCGTTC CTCGATCTGG ACATCCCGTT CGTGCAACGG
ATCAGGCGCC AGCAATGGAC GTTGATCGCG CGTATGATCG AGCGCGGCAT CAATGCGCCG
CTCACGTCGA GCCTGGGACG CCTGTTCGAC GCCGTCGCCG CCATTGCTGG CATCCGCGAC
CATGCCCTGT ACGAAGGGCA GGCCGCCATT GAACTGGAGA CGGTTGCCGC ACAGGATGAC
CGTCCCTATC CGTTTGCTCT GCTGGACGGC GCTCCACTGC GGATTGACGC GCTACCGACC
ATTCGCGCGA TTGTCGAGGA TTTGCGGGCG GGCGCGCCGG TCGCGCTGGT GAGTGGACGA
TTCCATAGCA CGGTTGCCGA GGCGCTGGCG CAGGCGTGTG AACGGGCGCG CGCGACCGGC
GCGCCCGCAG TTGTGGCATT GAGCGGCGGC GTCTTCCAAA ATCGGCGTCT CACCGAACTA
CTGGTCGCTC GGTTGGAGCG CACTGGCTTC CGGGTGCTAC TCAACCGGCG TGTCCCTCCG
AACGACGGCG GTCTCTGCCT GGGGCAGGCG GCAGTGGCGG CGGCGCAGAT GCAAAAGTAA
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| Protein sequence | MTHAHCNGSD QSQNIRRRLM VRGMVQGVGF RPFVYNLAQR LGLGGFVLND SDGVTLEIEG
PASALDAFEQ TLRTSPPPLA RIDAIGAEPV ASRGETHFRI ETSRAATVRN TLISPDVATC
DDCLRELFDP ADRRFGYPFI NCTNCGPRFT IVLDVPYDRA QTTMRVFPMC PACRSEYDDP
LDRRFHAQPN ACAVCGPSLA FHWWSTEFRP RLPVHASPLD QAAAALAQGA ILAIKGLGGY
HLACDALDSA AVARLRVRKQ REAKPFALMA PDLEAIQRLC SVNPDEEALL ESRRRPIVLL
DALPNVPVAP SVAPGYATLG IMLPYTPLHH LLLRAYAKEA PGRPAVLVMT SGNLSDEPIA
YRDDDAVARL ASIADGMLTH NRDIHMRCDD SVARIVAGGV QLLRRSRGYA PEPVTLTLHF
PRPLLAVGGH LKNTFCLAKE HDAFLSHHIG DLENLETLTS FREGVRHFAR LFDCEPEVVA
YDLHPEYLAT KEALASDIPL KIGVQHHHAH IASVLAEHGI EDPVIGVAAD GTGYGIDGSI
WGCEVLIADL REFTRFAHLA YIPLPGGDAA VRQVWRIGAT YLQRAFGDAF LDLDIPFVQR
IRRQQWTLIA RMIERGINAP LTSSLGRLFD AVAAIAGIRD HALYEGQAAI ELETVAAQDD
RPYPFALLDG APLRIDALPT IRAIVEDLRA GAPVALVSGR FHSTVAEALA QACERARATG
APAVVALSGG VFQNRRLTEL LVARLERTGF RVLLNRRVPP NDGGLCLGQA AVAAAQMQK
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