Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1834 |
Symbol | |
ID | 5539312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2342051 |
End bp | 2343832 |
Gene Length | 1782 bp |
Protein Length | 593 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640893972 |
Product | TPR repeat-containing protein |
Protein accession | YP_001431943 |
Protein GI | 156741814 |
COG category | [R] General function prediction only |
COG ID | [COG0457] FOG: TPR repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAT CCTTGACTCC CCGGCAACGC GCAGAGCGCC TGATCGACGA GGGAATGGCG GCAATCCGTG CCGGCGATCA GGCGCGCGCC CGCCAGTTAC TCAGTCAGGC AGTACAACTC GATCCCCAGA ACGAACGCGG CTGGCTGTGG CTCTCTGGTG CGCTGACCGA TCCTGTGCAG CGCCGCTACT GTCTCGAACG GGTCCTGGCG ATCAACCCGA AGAACGAGAT TGCGCAGCGC GGGCTGGCAA GTCTTAAGCC TGCCGCTTCA TCGCCTGCTG CTCTGTCGCC ATCCCCCGCC GCATCGGCGC CGAAACCGAC TGCTCCGTCG CAACCGGCGC AGCGGCAGCA ACCGGTGTTC GACCCACTTG CGCCCGATGC GACCACGACA CGACGCACAG CGACCGCCAC GCCGCTGCCG CGCCCGCCGA TACCTGCCAC CATCGCTCCG CCAGCACCCC AAACCGTTGC TCCTGACGCT GCTGCGACGA CGACCGGGGT GCAGCAGCGA GCGCCGGACG ATCTCCGAAA GCCTCCCCCG GCGATGCCTG CCGAATCAGC GCCGGTTGAT TCCCTGGCAT CACTGCGTCC CGGCGCAGCT GCGAAGCGCA GCGGTTTGTT GCGACGACCG GGCGCTGCCG GCAACGCCGC CGCAGATGCT CCACCAACCG CCATACCTGT CGAGCGGTCT AAAAAGCGCA CACGGACCGT TATCGTTGCG CTCGTGGGCA TTCTTGCGGT CGTCGTGCTG TTGCTCGTCG GACTGATGTA TCTGTATCCA GATATTCTCA ATCCGCCGCA ACCAACCGAG GAAGCGGCGA TTCCAACCGT TGAGCCGGAA GCGCCGACGC CGGTTCCAAC GCCGACGAGT ATTCCAACTG CTACTCCGGC GCCAACGCCG ACGCCGGTTG ATGTTCAAGC GCTGGTGCGT GAGGCGGAAG AACTTGCCGC TAGTGGCAGC CTGGGACAGG CGGCAGAACG CTATACCGAA GCGATCCGCG CCGATCCGTC ATCGTTCGAG GCATACTTTG GGCGCGCTCA GGTCAACTTC AATCTGTCGC TCTTCCAAAA TGCTGTCGAT GATTTCACCA GAGCATTGGC GCTCGATCCG GAGAACGCCG AGGCGTACCA CCAGCGCGCG CGCGCCTTCT ATCGCCTGCA ACAGTACGAC GAAGCCATTC GTGATTTCAC CGAGGCGCTT GCGCGTGATC CCAACAACGA TGTTCTCCTG ATGCGCCGCG GCGTCGCCTA CCGCGACAAG GGCCAGTACG ACGAGGCGCT GGCGGATTTC GATCAGTCGC TCCAGTTGAA CCCGGACGTC AGTTTCACCT ATTACCACCG CGCATTGTTG TTCCAGGCGA CCGGCAGGCT TGAGCGGGCG CGCGCCGATT TTGATCGGGC GCTGACGATT GCGCCGGAGT ATCGTCTGGC ATATGTCGGG CGTGGCGGGT TGCGCTTAGA GCAGGGCGAT GCGCGTGGCG CGCTCAGGGA CTGCACCCGC GCCATCGAAC TCGACGCTAC CGAGATCGAT GCGTATTTCT GCCGCGCCAG AGCCGCTATT GCGCTCCGTG ATTACCGCGC CGCCGTCGCC GACCTCGATA CCGTCATTGC GCGCGATCCC GATAGCGCCG ATGCTTACCG CGAGCGTGGG AGGGCGCACC AGGCGCTGCG CGACACCGAT GAGGCGCGGG CGGATTATCA GCGCGCCATC GAACTCTACC GCCTTCAGGG ACGCGACAAG GACCTGGCGG AGGTCGAAAA GTTGCTCGCT GCGCTGAAAT AG
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Protein sequence | MNESLTPRQR AERLIDEGMA AIRAGDQARA RQLLSQAVQL DPQNERGWLW LSGALTDPVQ RRYCLERVLA INPKNEIAQR GLASLKPAAS SPAALSPSPA ASAPKPTAPS QPAQRQQPVF DPLAPDATTT RRTATATPLP RPPIPATIAP PAPQTVAPDA AATTTGVQQR APDDLRKPPP AMPAESAPVD SLASLRPGAA AKRSGLLRRP GAAGNAAADA PPTAIPVERS KKRTRTVIVA LVGILAVVVL LLVGLMYLYP DILNPPQPTE EAAIPTVEPE APTPVPTPTS IPTATPAPTP TPVDVQALVR EAEELAASGS LGQAAERYTE AIRADPSSFE AYFGRAQVNF NLSLFQNAVD DFTRALALDP ENAEAYHQRA RAFYRLQQYD EAIRDFTEAL ARDPNNDVLL MRRGVAYRDK GQYDEALADF DQSLQLNPDV SFTYYHRALL FQATGRLERA RADFDRALTI APEYRLAYVG RGGLRLEQGD ARGALRDCTR AIELDATEID AYFCRARAAI ALRDYRAAVA DLDTVIARDP DSADAYRERG RAHQALRDTD EARADYQRAI ELYRLQGRDK DLAEVEKLLA ALK
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