| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1765 |
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| Symbol | |
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| ID | 5539243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2268027 |
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| End bp | 2269652 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640893904 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001431875 |
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| Protein GI | 156741746 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.186436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCCAC GCACACGAAT AGTTGTCCCG CTGCTCCTGA TAACCGGGTT GATCGGCGGC
GGGTACTGGT GGTTCCAGCA ATCGGCGCAG GCGCGGAATG GCGCCCTCAC CGGATCGGGC
ACGATCGAAG CCGAAGAGGT GTTGGTGACC GCAGAAATCG CCGGACGCGC GCAGCGGCTG
TTTGCCGATG AAGGATCGGA GGTGCGCGTC GGGCAGGAGC TGGCGCAGAT CGATACGGCA
CTGCTCGAAG CGCAACTGGA TCAGGCGAAG GCGGCAGTGG CGGCAGCCGA GGCGAACCTG
GCGCAGATCC GCGCCGGAAC GCGGAGCGAG GAGATCGCCA TTGCCGAGGC GCAGGTGAAG
CAAGCGGAAG CGGCGGCGGC TGGCGCTGCC CGGGCGTATG AGCACGCGCT CGCCATCCTG
AACAATCCAC GAGAACTGGA CCTGCAACTG GCGCAGGCGC GCGCCAACCG CGATTCGGCG
CTGCGCGCGC TGGAACAACT GCGCGCTGGC ACGCGCCAGG AGGATATCGA CGCGGCGCGC
GCAGCGCTCG CACTGGCACA GGAGAACCTG CATGCCGCGC GCGATAAACT CTCCGCCGCC
AAGACACTGG CGGAAGCGCA GGTCGAACAG GCGGCAGCGG CGCTCACGCA GGCGCAGGCG
CGTTACGCTC AGGCGAAGAG CAACTGGGAG TATGTGCGCG ATACCGGGCA GGATGCACTT
ATGCCTCTGG TGCTGGTCAC GACGCCGGCC GGCGTGCAAC GCCTGCCGAA TACCGTGAGC
GATGGGGCGC GCGAGCATTA CTATGCACAG TTCGTTCAGG CGGAAGCGGC GCTGCGTCAG
GCGGAGACGG CGCTGGAACA GGCGCTGGTG CAGGCGGAAC AGGCGCGCCA GGCAGAGGTA
GTTGGCGTGC GTCAGGCAGA ATTGCAGGTT GATAGCGCAC AGGCGGCGCT GGCAAAAGCT
GAAGCAGGAC CAACGCCCCA AGATATGGCT GCTGCCGAAA CGGCGCTCGC AAACGCGCAA
CGTCTTTTCG ATGTGGTCGA GGCGATGCGC GCCGATCCGC AGCAGTTGCG CGCGGCGGTC
GATGCGGCGC GCGCGCAGCA GGCAATCGCC GAGGCGCAAC TGGCGCAGGC GCGCGCGCGC
CTGGAGATGG CGCGGAACGG CGCCCGCCCG GAGCAGATTC AGGCGGCGGA GGCGCAACTG
GCGCAGGCGC GCGCAGCACA ACGGCAGATC GAGGTGATGA TTGAGAAGGC GACATTGCGC
GCGCCGCGTT CCGGCATCAT TCTGAGTCGC CCCATCCACG AAGGAGAACA GGTGACCCCC
GGTATGCCGC TCATGACCAT TGGCTCGCTC GACACAGTAC GCTTGACCGT GTACATCAGC
GAAGCCGACA TCGGGCGCGT GCGCCTTGGA CAGACGGCGG AGGTCACGGT CGATAGTTTT
CCGGGTCGCG TCTTTCGTGG GACCGTCACA TTCATCGCCC AAAACGCCGA GTTTACGCCG
CGCAACGTTC AGACACGCGA CGAGCGCGCC ACAACGGTTT TTGCCGTGCG CATCGAGTTG
CCCAATGCCG ACCACGCGCT CAAGCCCGGT ATGCCAGCGG ATGTCACGCT TCTTGAGAGG
GGTTAG
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| Protein sequence | MHPRTRIVVP LLLITGLIGG GYWWFQQSAQ ARNGALTGSG TIEAEEVLVT AEIAGRAQRL
FADEGSEVRV GQELAQIDTA LLEAQLDQAK AAVAAAEANL AQIRAGTRSE EIAIAEAQVK
QAEAAAAGAA RAYEHALAIL NNPRELDLQL AQARANRDSA LRALEQLRAG TRQEDIDAAR
AALALAQENL HAARDKLSAA KTLAEAQVEQ AAAALTQAQA RYAQAKSNWE YVRDTGQDAL
MPLVLVTTPA GVQRLPNTVS DGAREHYYAQ FVQAEAALRQ AETALEQALV QAEQARQAEV
VGVRQAELQV DSAQAALAKA EAGPTPQDMA AAETALANAQ RLFDVVEAMR ADPQQLRAAV
DAARAQQAIA EAQLAQARAR LEMARNGARP EQIQAAEAQL AQARAAQRQI EVMIEKATLR
APRSGIILSR PIHEGEQVTP GMPLMTIGSL DTVRLTVYIS EADIGRVRLG QTAEVTVDSF
PGRVFRGTVT FIAQNAEFTP RNVQTRDERA TTVFAVRIEL PNADHALKPG MPADVTLLER
G
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