Gene Rcas_1750 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1750 
Symbol 
ID5539228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2253487 
End bp2254743 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content63% 
IMG OID640893889 
Product2-alkenal reductase 
Protein accessionYP_001431860 
Protein GI156741731 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.137948 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.435495 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCTT CTTTGATATT CGCCGCACTC GTGACGATGC TTGTGCTCCC CATGGGATGC 
ACCCTGCCAT CGGTCGATCT GCCGCGTCCT GTGGCAACAG AACAAACTAC CGCTCCGACC
GCAGCAGTTC AGGCAGAGGC GACCCGCGCA CCGATCACGC CGTCAGCGCC AACGACCACC
CCTGCGCCAT TGCCTGCGCA GGCGCCGCTG CCGACCCTTC CACCAGAACT GACCAACCCG
CTGGAAGCCG AGCAGGCAGC ACTGACCGCC CTCTACCGGC AGGTGAATCC GGCGGTTGTC
AGCATTGAAG TGGTTGCCGA TCATCCGCCG GTTGGCGGAG CGCCGTTCAC CGTTCCCACC
AGTCAGGGTT CTGGCTTTCT GTTCGATGAT CAGGGGCATA TTGTCACCAA TAACCACGTG
GTCGAAAACG GCGCGAAGTT CCAGGTGCGC TTCTCCGACG GCACGGTGGT GATGGCGCGG
TTGGTCGGCA GCGATCCGGG AAGCGATCTT GCGGTGCTGA AAGTCGATGC CTTGCCGCCG
GGAGCAGCGC CGTTGCCCCT CGCCGACTCG CGAACCGTCG AGGTCGGTCA GCGCGCGATT
GCAATCGGCA ATCCGTTTGG GTTGCGCAAC ACCCTCACGG TGGGAGTCGT TAGCGGCATT
GGGCGCAGCC TCAGCGGGCC CGCGAGCAAC AGCGGCGGGC GCTTCCGCAT CCCGAATATC
ATTCAGACGG ACGCGGCGAT CAATCCGGGG AATTCCGGCG GTCCGCTGCT CAATATCTAC
GGCGAAGTGA TCGGTGTCAA TACGGCTATC AGCAGCGGTT CCGGCGCCTT CGAGGGGGTC
GGGTATGCAG TGCCGTCCAA CGCGGTCAGC CGGGTGGTTC CGGCGCTCAT CCGCGATGGT
CGCTACGATC ACCCGTGGAT GGGCATCGGA ATGCGCGATG TCGATCCGTT GCTGGCGGAT
AGCCTGAACC TGCCGGCGCG TCAGGGTGTG CTGATCACCG AGGTTGTGCC CGATAGCCCT
GCCGCCCGCG CAGGGCTGCG CAGCGGAACG CAGATCGTTT CGGTTGGCGG GCGCGAATTG
CGCATCGGTG GCGACATTAT TATTGCGATT AATGGCCAAC CGGTGCGTGA CAGCGATGAA
CTCGTCAGTT ATCTCGAACT TGAAACGTCC GTCGGCGATA CTGTGATGAT GACCGTCCAA
CGTGGCGATC GCCAGGAGCA GATTACGATG ACACTCGGCG CACGCCCGCG TGAGTGA
 
Protein sequence
MRASLIFAAL VTMLVLPMGC TLPSVDLPRP VATEQTTAPT AAVQAEATRA PITPSAPTTT 
PAPLPAQAPL PTLPPELTNP LEAEQAALTA LYRQVNPAVV SIEVVADHPP VGGAPFTVPT
SQGSGFLFDD QGHIVTNNHV VENGAKFQVR FSDGTVVMAR LVGSDPGSDL AVLKVDALPP
GAAPLPLADS RTVEVGQRAI AIGNPFGLRN TLTVGVVSGI GRSLSGPASN SGGRFRIPNI
IQTDAAINPG NSGGPLLNIY GEVIGVNTAI SSGSGAFEGV GYAVPSNAVS RVVPALIRDG
RYDHPWMGIG MRDVDPLLAD SLNLPARQGV LITEVVPDSP AARAGLRSGT QIVSVGGREL
RIGGDIIIAI NGQPVRDSDE LVSYLELETS VGDTVMMTVQ RGDRQEQITM TLGARPRE