| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1709 |
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| Symbol | |
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| ID | 5539187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2204275 |
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| End bp | 2206113 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893848 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001431819 |
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| Protein GI | 156741690 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.708593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATAA CCCGCGTCAC TCCGAAAGCT GGCTCTACCT CGCCTCGATC CGCCTCCTCG
GCCGCCGTCT CGCCAAAGCG TCGTGAGCCA GGGCACTCTT ATCATTGGAC TATTGGAGAG
CTTCTTATTC CGGCATGCGA ACGCATCGTC ACGATCGAGG ATGCAGCCGA ACTGCGGTTT
CATCGCACCC ATCCACACGT GGCGCGCCTT GAGGCGCGTC CACCGAATGT CGAAGGCGCT
GGCGAAGTCA CGATTCGCCA ACTGGTGCGT AACGCGCTGC GTATGCGCCC GGATCGGATC
ATCGTCGGCG AGGTGCGCGG CGCTGAGGCG CTCGACATGC TCCAGGCGAT GAACACCGGC
CACGAAGGCT CGATGACGAC GGTGCACGCC AACTCGCCGC GTGATGCGTT CAGCCGCCTG
GAGACGATGG TTATGTGGGC TGAGGGCGCC AGGGAGCTGC CGCTCAGCGC CATTCGGGAA
CAACTCGTCG GCGCGCTCGA TATTGTCATT CAACAGACGC GCCTGCCCAA CGGTCGTCGC
AAGGTTATCA GCATTTCCGA GGTTCAGGGC ATACGCCACG GTGAAGTCGA ACTGCGCGAC
ATTTTTGTGT TTCACAGCAG TGTTGATGAC AAAGGTCAGG TGCTTGGCGA GTTTATGGCA
ACCGGCGCCC TGCCGCGGTG CCTGCGCAAG ATTGAACCGG CGTGCGGCGC ACTCGATCAC
CTGTTCAAGT CGAATTATCT GCGTGATACG CTTGGACCGG AGATTCTGCA GAACCCGGCG
ATTACCGAGA TTATGGTCAA TGGTCCATTT GATGTCTGGA TCGAAGAGCG CGGCAAACTG
CGTCCGGCGC CGGAGATCCG CTTCCGCGAC CATCACCATC TGCTGAATGT CATCAACACG
ATCATCGCAC CGCTGAACCG TCGTCTTGAT GAGTTGAATC CGATGGTCGA CGCGCGTCTG
CCGGATGATG AGCGCTTTCC CGGCGGTGGT CGCATCAACG CCGTTCTCGA CCCGATTTCT
CTGGTTGGTC CGGTGTTGAC CATCCGGCGC TTCAGCCATA CCCCATTTAC GCTCGATCGA
TTGGTGGCGC TTGGCAGTAT GTCGCCACAG ATGGCGGCAT TTCTGCGCGC GTGTGTTCGC
ATCAGACGCA ACATGCTGAT CTCTGGCGGC GCCGGCAGTG GGAAAACCAC GTTGCTGGGC
GCGATTGCAA AGGAGATCGA TCTGCAGCGT GAGCGCATTA TCACCATCGA AGACGCCGCA
GAACTGCGCA TTGGCGCGCC AGGGGACCAC GTGCTCGGTC TCGAGACCCG TCCGCCCGAC
CGATTTGGCG AAGGTGAGGT GACGATCCGC CAGCTGGTGC GCAATGCACT GCGTATGCGC
CCCGACCGGA TTATTGTCGG CGAGGTGCGC GGCGCTGAGG CGCTCGATAT GCTGCAAGCC
ATGAATACCG GGCACGAAGG CTCGCTCACT ACGCTGCACG CCAACTCGCC TCAGGAAGCG
TTCAGTCGAT TGGAGACGAT GGTTCTCTGG GCGCGCGAAG CCGAGGCGCT CTCGCTCTCC
GCCATCCGAC GTCAGTTGTG CACGCTCGAT ATTGTGGTTC AGCAGGCGCG CCTTGCCGAC
GGCAGCCGCA AAGTCGTCGC TATTGCCGAA GTGGTTGGTC TTGATGAGCG TGACCAGGTG
CACGTCGAGG AGATTTTTCG GTTCGAGCAG CATGGCATCG ATCCTGACGG CCAGGTGGTG
GGTGAGCATG TTGCAACCGG CTACGTGCCG CGGGTGCTGG AAAAGTTGTG TGCATATGGC
ATCACGCTGG AGGAAAAGGC ATGGTGCAGC CGATCATGA
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| Protein sequence | MTITRVTPKA GSTSPRSASS AAVSPKRREP GHSYHWTIGE LLIPACERIV TIEDAAELRF
HRTHPHVARL EARPPNVEGA GEVTIRQLVR NALRMRPDRI IVGEVRGAEA LDMLQAMNTG
HEGSMTTVHA NSPRDAFSRL ETMVMWAEGA RELPLSAIRE QLVGALDIVI QQTRLPNGRR
KVISISEVQG IRHGEVELRD IFVFHSSVDD KGQVLGEFMA TGALPRCLRK IEPACGALDH
LFKSNYLRDT LGPEILQNPA ITEIMVNGPF DVWIEERGKL RPAPEIRFRD HHHLLNVINT
IIAPLNRRLD ELNPMVDARL PDDERFPGGG RINAVLDPIS LVGPVLTIRR FSHTPFTLDR
LVALGSMSPQ MAAFLRACVR IRRNMLISGG AGSGKTTLLG AIAKEIDLQR ERIITIEDAA
ELRIGAPGDH VLGLETRPPD RFGEGEVTIR QLVRNALRMR PDRIIVGEVR GAEALDMLQA
MNTGHEGSLT TLHANSPQEA FSRLETMVLW AREAEALSLS AIRRQLCTLD IVVQQARLAD
GSRKVVAIAE VVGLDERDQV HVEEIFRFEQ HGIDPDGQVV GEHVATGYVP RVLEKLCAYG
ITLEEKAWCS RS
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