| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1689 |
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| Symbol | |
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| ID | 5539165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2175078 |
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| End bp | 2178272 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640893826 |
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| Product | hypothetical protein |
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| Protein accession | YP_001431799 |
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| Protein GI | 156741670 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1287] Uncharacterized membrane protein, required for N-linked glycosylation |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0104584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000757543 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACGATTG TCATTCTCAT ATTCATTGTT CTGACGCTCA TCTTGATCGG CGCGATCATC
GCTCACGCGC TGCCTGTCGC ATGCCGCGCC GATGATCCGC TCGAGCGATA TTTTGAGTAT
GCGCTGATCG GTGCGTTGCT CAACGGATGG CTGGCGTTCA CCCTGGCGCA GATCGGCGCC
TTCTCCGCGC TGCTGCACGC CGCTATCATT GCCGTTCTTT GCCTTATCGC TCTGCGGATC
GGTCGCCGCC ACGCGCCCAA CACTCCGACC ACGCCAGCAG ATGTGTGGAG GCGGTGCATT
GCCTGGGTCA GGCAGTGCAC TGCACTGCCT CTACGGGAAC GTTCAACATC CCTCCTCCTT
GTGGTCCTCC TTCTCGTTTT CGCTCTCCTC GTTTCTCGCC CCTTCGAGAC GATCATTGGC
GTGCGCGATG CTGGCGTGTA TGCCAACGCC GGGTTCATTA TGGCGCGCAC CGGTTCACTT
ACCTTCACCG ATTCAGTGGT GGCGCAGATC GCCGCCGATC AGCAGTCGTC CGATCCTGAG
ATTGCCGATG CAGCGCGTCA GGCGGAAACC AACTTCCTAG GCGTGCAGAA TCCGCAACGG
TTTATCGCCA CACGCCTGCG CGCTGCCGGC TTCTTCATCG ACCAGGGAGA CCTGGCGCGC
GGGCGCGTCG TGCCGCAGGG GTTCCACCTC TTCCCGGCAT GGATTGGACT GATCGCTGCG
TTCTTCGGAT TGCGCGCCGG ATTACTCGCG CCCGCCGTCA CCGGTCTGCT CGGCATCTGG
AGCGTCGCCA TGCTCACCCG TCGCCTCGCC GGTCCGTGGG TTGCGCTCGT GGCGGCGCTC
TTCCTGACGC TCAATGCCGT GCAGGTCTGG TTCAGCCGCT ATACGACCGC CGAAACCGCC
GCGCAGTTCC TTGTCTTTGC CGGACTCTAC GCCTTTGCCG CCGCATTTGG ACATTCGATG
GCAAACGTTC AACGCACCAT GCTCCTCGCC CTCCTCGCGG GGCTGGCATT CGGGCAACTC
GCGCTGACGC GCATCGAATT CTTCCTGGTT CTCGGTCCGG TGGCGCTCTA CCTGCTGCAC
GCCTGGCTCG CGCGTCGCTG GACGCTGCCG CATACCGCGC TGCTGGCGGG CATCGGAGCG
ATGGTGCTGC ACGCCGGGTT GCACATCGCA TTCCTGGCGC GCGCCTATTT TTTCGATACG
CTCTTCGCCC GCCTCCAGGA TTTTGCCCTT ACTGCGGCAT TCGCCCTGCC ATTCCTCACT
CCAACGCTGC GTCAGGTTTA CCTGTTGCGC CCCTGCTCGC GCCTGACGAT GCAGCCCTGC
CCGCCGATTG CCGGCATGCC GCCGACTGCC GATGCGCCGC TGAACTGGAC CCGTATCGGC
ATCGAGGCGC TGGTCGTTGT CGTGGTTGTG GCCGCCCTGG TCGCAATCCG CCGCCTGAAC
CTGATCGCCC GCGTCTCGCC GCTGCTGGTG CGCCTGAACC GTCCGTTGCG TCTGGTTGCG
GCAATTGCCA TCATCGGGAT CGGTGGATAT GCGTACCTGA TCCGTCCGCA GATTCTGTCG
CTGCCGGTCA TCACCGCGCT CCCCGCATGC CTTGCCCCTG AACAACTGAC GAACCCGCAG
GGGGCATGCC TGACGCTCCA GGGGTATGTC GGCGCGCCAA TTGCGACGCC AGCCTATGTG
GACCCGCTCG CCGCGTGGTT CGACCGCGCC ATTGGCGCTG TGCGCGGGCG CGCCGCTCCG
CCGCTGGACG CCTGTATCGC GCTGCGGCGC TCCACGTTGC CGCCAACTGC CGATGGACGC
ACCATACCGG AGGTTCTTCG AGACGGCTTG CTCGACGAAA CCGACGTTCC GCCTGAGATG
CTGGCAACCC TCCGCGCTTG CGACCGCTAC GTGCTGCGCG ATCTGTTCGG CGCAGCGCAG
GCGAACCTGG TGCGCCTGGG ATGGTATCTT TCGCCGCCGG GCATCGCGCT CGCGCTCATC
GGACTGGCGC TCCTCGCCTA TCGCGCCAAC TCGACCTCCT GGTTGTTTCT GGTCATCGCC
GCTGTTGCGT CGGTCGTGTT CCTGCGACTG ACCTACGGAA CCAGCGACCA GCACTACATC
TATATTATGC GCCGCTACGT GCCGCACGTG TATCCCGCAT TCGCCATCGG CGCCGCCTAC
GCCATCGCTC GCCTCTCGTT CAACGTTCAA CCCTCAACGT TCCACATTCC ACGTTCCACG
TTTTCCCGTC TCATCCTCAC TCTCGTCCTC GTTCTGTTTC TGGTCGTTAC AGGCAGACCG
ATCTACCGTC ACACTGAATA CGCTGGCGCG CTCGATCAGA TCGGCGCTAT GGCAGGGCAG
TTCGATCCCG GCGCAATTGT CCTCATGCGC GGCGGTGCGC CTTCCTTCGC ACAGGCGCGC
GACATCCCCG ACCTGCTTGC CACACCGCTC ACCTTCGCCT TCGGTATTGA CGCATTTGCG
CTAAAAAGCC GCGACCCCGG ACGATACGCG CCGCAACTGG CGCGCTACAT CCGCCGCTGG
CACGACCAGG GACGACCGGT GTATCTGGCA ATCGGCGCGA GTGGCGCAAT TGCGCTACCA
GAGTGGCGAC TCGAACCGGC TGGACGTCTG CACGTCGACC TGCCAGAGTA CGAACAGCCG
ACCGATCACA AGCCCTCCGC CGTTCAGCGC TTCACCCTCG ATTTTGCGCT CTACCGCCTG
TTGCCCGACG AACCGACGCC AGCGGAACCG CCAGCGCTCA CCATCGCGCC CGACGACTAC
GCCTATCAGG TGCGCGGCGT TTACCGCGCC GAACGCATCG GCGACCGCCT GATCGCCTGG
ACCGATGGCG ACGCGATCTT CCGCCTGCCG GCGCCGATGA CTGAGCCGCT CACCATCAGC
GTAACACTTG CTGCCGGCGC GCGCCCCGCA ACGCTGCCCG GCGAAACCTG CCTGTCGCTC
GCCGCCGAAC CTGGCTCCTC GACCGATGAA GCGACGTTTA CCGCGCCGGT CTGCACCGTC
CCCGGCGCCG AACCTCTCAC TATCACACTC AGCGCCGACC CGCGCAATCT GCCGCGCTCA
CCGACCGGAC ATCTCCTGTT GCGGGTGCAA ACCCCACCCT TCATCCCCGC CCGCGACGAT
CCCGCCAGCC ATGATCCGCG CCGACTTGGG GTTCAGATTG TCGCGTTAGC GGTGAGGAGC
GCGCCCATTC GATAA
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| Protein sequence | MTIVILIFIV LTLILIGAII AHALPVACRA DDPLERYFEY ALIGALLNGW LAFTLAQIGA
FSALLHAAII AVLCLIALRI GRRHAPNTPT TPADVWRRCI AWVRQCTALP LRERSTSLLL
VVLLLVFALL VSRPFETIIG VRDAGVYANA GFIMARTGSL TFTDSVVAQI AADQQSSDPE
IADAARQAET NFLGVQNPQR FIATRLRAAG FFIDQGDLAR GRVVPQGFHL FPAWIGLIAA
FFGLRAGLLA PAVTGLLGIW SVAMLTRRLA GPWVALVAAL FLTLNAVQVW FSRYTTAETA
AQFLVFAGLY AFAAAFGHSM ANVQRTMLLA LLAGLAFGQL ALTRIEFFLV LGPVALYLLH
AWLARRWTLP HTALLAGIGA MVLHAGLHIA FLARAYFFDT LFARLQDFAL TAAFALPFLT
PTLRQVYLLR PCSRLTMQPC PPIAGMPPTA DAPLNWTRIG IEALVVVVVV AALVAIRRLN
LIARVSPLLV RLNRPLRLVA AIAIIGIGGY AYLIRPQILS LPVITALPAC LAPEQLTNPQ
GACLTLQGYV GAPIATPAYV DPLAAWFDRA IGAVRGRAAP PLDACIALRR STLPPTADGR
TIPEVLRDGL LDETDVPPEM LATLRACDRY VLRDLFGAAQ ANLVRLGWYL SPPGIALALI
GLALLAYRAN STSWLFLVIA AVASVVFLRL TYGTSDQHYI YIMRRYVPHV YPAFAIGAAY
AIARLSFNVQ PSTFHIPRST FSRLILTLVL VLFLVVTGRP IYRHTEYAGA LDQIGAMAGQ
FDPGAIVLMR GGAPSFAQAR DIPDLLATPL TFAFGIDAFA LKSRDPGRYA PQLARYIRRW
HDQGRPVYLA IGASGAIALP EWRLEPAGRL HVDLPEYEQP TDHKPSAVQR FTLDFALYRL
LPDEPTPAEP PALTIAPDDY AYQVRGVYRA ERIGDRLIAW TDGDAIFRLP APMTEPLTIS
VTLAAGARPA TLPGETCLSL AAEPGSSTDE ATFTAPVCTV PGAEPLTITL SADPRNLPRS
PTGHLLLRVQ TPPFIPARDD PASHDPRRLG VQIVALAVRS APIR
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