| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1683 |
|---|
| Symbol | |
|---|
| ID | 5539159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2164616 |
|---|
| End bp | 2165908 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640893820 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001431793 |
|---|
| Protein GI | 156741664 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000786383 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGAG GACCGCGAAC CCCCGACGCC GCAGGTCCGG CAAAAATCCG GGTGATGATC
GTTGACGATA TCGCCGAAAC ACGCGATAAC ATCGAGAAAC TCCTCTTCTT CGAGAAAGAT
ATCGAGGTCG TCGCCAAAGC ATCGACCGGG CGCGAAGCGC TGGCGCTCGC CAAACAGCAC
CGTCCCGACG TCGTATTGAT GGACATCAAC ATGCCGGACA TGGACGGGAT CGCGGCGACC
GAGGCGCTGT TGAGCCAGGT GCCCGAAGCG CAAGTCATCA TGATGAGCGT GCAGGGAGAG
CAGGATTACC TGCGCCGCGC TATGCTCGCC GGCGCGCGCG AATTCCTGCC CAAGCCCATC
GGCGCTGAAG AACTCTACAG TGCAATCCGT CACGTCCATC GCCTGGCAAG CACCCAGCGG
CGTTATATCA CGACGGCGCC GCCGGGAGCA GGCGGATCGG GTGAGGATGA AGGCGCACAC
GGACAGGTTA TTGCGGTCTT CAGTCCGAAA GGCGGCACAG GCACATCGTC AATTGCCTGC
AATCTGGCAG TCGCATTGCG CCTGCTGACC AACAAGAAAG TCGCGCTTGT CGACGGCAAC
CTGACGTTTG GGGATGTCGG CGCGATCCTG AACCTGGTGT CGTCCAAAAC GATTGCCGAC
CTGGTCAATC GTATCAGCGA ACTGGACCGC GACCTGCTCA ACGATGTGAT GGCGACCCAC
GCCTCGCAGG TGAAAGTGCT GCTGGCGCCA CCCAATCCAC AGACCGGCGA ACTGGTCACA
TCGGATCATC TGCGCGCGAT TCTGGAGATG ATGAAGAAAG AGTTCGACTA TGTTATCGTC
GATACACAGG CATCGTTTCA AGATCGTGCG CTGGCGGCGC TCGATATGTC CGACCGGATC
GTGGCGCTGA TGACCCTCGA AATCCCGTGC ATCAAGAATA TCAAACTGTT CCTCGAAGTG
GCAGAACTGC TGGAGTATCC CAAGGAAAAA ATCGTTCTGG TGCTGAACAA AGCCGATAAT
CGGCTCGGTA TGCGCGTCGA GAATGTCGAA GCGAATATTC AGCACAAAGT TGCGCTGCAA
ATTGCCAACG CCGGTCACGA AATGACGCTG GCGGTCAATC AGGGAGTGCC GCTGGTCATT
TCCAAGCGCG ACCTTCCCAC CGCAAAAGAT ATTGTGGCGC TGGCGAAACT GCTGAGCAGC
GGGCTAGCGG CGCAAACCGC CACGACGGCG AAGAAAACCG AGAAAGCGCC CGAGAAATCA
GGGCTGTTTG GCAAATTACT GGCGCGGCGC TGA
|
|---|
| Protein sequence | MAGGPRTPDA AGPAKIRVMI VDDIAETRDN IEKLLFFEKD IEVVAKASTG REALALAKQH
RPDVVLMDIN MPDMDGIAAT EALLSQVPEA QVIMMSVQGE QDYLRRAMLA GAREFLPKPI
GAEELYSAIR HVHRLASTQR RYITTAPPGA GGSGEDEGAH GQVIAVFSPK GGTGTSSIAC
NLAVALRLLT NKKVALVDGN LTFGDVGAIL NLVSSKTIAD LVNRISELDR DLLNDVMATH
ASQVKVLLAP PNPQTGELVT SDHLRAILEM MKKEFDYVIV DTQASFQDRA LAALDMSDRI
VALMTLEIPC IKNIKLFLEV AELLEYPKEK IVLVLNKADN RLGMRVENVE ANIQHKVALQ
IANAGHEMTL AVNQGVPLVI SKRDLPTAKD IVALAKLLSS GLAAQTATTA KKTEKAPEKS
GLFGKLLARR
|
|---|
| |