Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1682 |
Symbol | |
ID | 5539158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2163192 |
End bp | 2164589 |
Gene Length | 1398 bp |
Protein Length | 465 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640893819 |
Product | type II secretion system protein E |
Protein accession | YP_001431792 |
Protein GI | 156741663 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00000847512 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCGCTCT TGAAACGCAT CGGTGGAACT CCCGGCGCAA CCGGACAACT TCCGAACACA CCGGCCGTCG GCGGCGCAGC GGCGGCTCGT CCTGGCGCTC CGGTCGCCCC GCGCCGTGAG GAAGAGAATA GCATCATCGA ACTGCGGCAG CGCGTTCAGC AGCGCCTGAT CAATGAACTC GACCCGCGCC TCGACCTTTC CAACGTCGCC AGAGTGCGGC AGCAGGTCGA GGAGATTTTC AATACGATCC TTGACAGCGA AAATATTGTT CTGTCGCGGT CGGAGCGCGC GCGCCTGTTC GAGTCGATTG CTGCCGATAT TCTCGGCTTC GGACCGCTCC AGGAATTGCT CAACGATCCG GAGATTTCCG AGATTATGGT CAATGGTCCC AGGAAGGTCT ATGTCGAAAA GCGCGGCAAG ATTCAGTTGA GCGACGTCAC GTTCGTCGAT GAACAGCACG TCCTGCGAGT CATCGACCGG ATCGTCGCTC CGCTTGGTCG CCGGATCGAT GAGTCTTCGC CAATGGTCGA TGCGCGCCTC CCGGATGGCA GCCGTGTGAA TGCGGTGATC CGCCCGATTG CGCTCTGTGG ACCAACGATC AGTATTCGGA AGTTTCGCAA GGAAGGCATT ACGATTGAAG ACCTGATTCG CTTCGGCTCG CTGACCCGCG AAATGGCGGA GTTTCTGTCG GCATGCGTCC GCGCATCGCT CAATATCGTG GTTTCCGGCG GCACCGGTTC GGGCAAGACG ACCATGCTCA ATGTGCTCTC GTCGTTCATT CCCGACGATG AACGCATTAT CACGGTCGAG AATGCCGCAG AATTGCAGTT GCGCCAGGAG CACGTCGTGC CGCTCGAGTC GCGTCCGCCA AATGTCGAGG GCAAGGGCGA GATCAGCATT CGCGATCTGG TGATCAATAC CCTGCGTATG CGCCCGGAAC GCATCGTCGT CGGCGAGTGT CGCGGCGGTG AGGCGCTGGA AATGCTCCAG GCGATGAATA CCGGTCACGA CGGGTCGATG ACCACGCTGC ACGCGAACTC GCCACGCGAC GCGATTGCGC GTATCGAAAC GATGTGCCTG ATGGCCGGTA TGGACCTGCC GGTGCGCGCT ATCCGTGAGC AGATTGCGTC GGCGGTGAAT TTGATCGTTC AACTGGCGCG CCTGAAAGAT GGATCGCGCA AGGTGATCTA CATTACCGAA GTGCAAGGCA TGGAGGGCGA TGTTGTCGTG CTGTCGGACA TTTTTGTGTT CGAGCAGCAG GGGATCGATG AGCGCGGCAA GATCATCGGT CAACTGAAGC CGACCGGCAT CCGCCCGCGA TTTATCGACC GTTTCGAGGA ACGCAATATT TATCTGCCGC CAAATATTTT TGGCTACAGC AGCGGATCGT TCTTCTAG
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Protein sequence | MSLLKRIGGT PGATGQLPNT PAVGGAAAAR PGAPVAPRRE EENSIIELRQ RVQQRLINEL DPRLDLSNVA RVRQQVEEIF NTILDSENIV LSRSERARLF ESIAADILGF GPLQELLNDP EISEIMVNGP RKVYVEKRGK IQLSDVTFVD EQHVLRVIDR IVAPLGRRID ESSPMVDARL PDGSRVNAVI RPIALCGPTI SIRKFRKEGI TIEDLIRFGS LTREMAEFLS ACVRASLNIV VSGGTGSGKT TMLNVLSSFI PDDERIITVE NAAELQLRQE HVVPLESRPP NVEGKGEISI RDLVINTLRM RPERIVVGEC RGGEALEMLQ AMNTGHDGSM TTLHANSPRD AIARIETMCL MAGMDLPVRA IREQIASAVN LIVQLARLKD GSRKVIYITE VQGMEGDVVV LSDIFVFEQQ GIDERGKIIG QLKPTGIRPR FIDRFEERNI YLPPNIFGYS SGSFF
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