| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1681 |
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| Symbol | |
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| ID | 5539157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2162064 |
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| End bp | 2163047 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640893818 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001431791 |
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| Protein GI | 156741662 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000554602 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGATCT CTGCGGACCT GACCCGATTC ATTGCGCCTG CCGCCATTTT CGTGGTTATT
CTGGCGGTCT TTGCGCTGTT GGCGCGCCGC AGCGCCGGTA ATGCCAGTTA TGAGGAACGT
CTGACCCAGT TTGCCGGGCG ACGCACCGAT CAACTTCAGC GCTCCGCCAA GGATCAGTTG
CGCGAGATCG ATAAGGTCGT GGCGCGCGGC AAGCGCGGCA GCGAGACGCA GCGCAACCTG
GCGCGCGCCG ACCTGAAATT GACGGTGACA GAGTTCTATG CCATCAAACT TCTTGCTGCC
GCCGTCGGCG CTGCGGTTGG GGCATTCATC GGGCGCGCCA GTTGGGAGGC GCAACTGCTG
TCCGGAATCG TCGGTTTTGC GCTTTTCTCG TTCTTTCCCG ATCTCTACGT CGGGTATGCC
GCTAAACAGC GGGTCACGAA ATTTAATGCC CAACTCGGCG ATACGATCAA TATGCTGGCG
AATTCACTGC GGTCGGGGTA TAGTCTGCTT CAGTCGATGG AACTGGTCAG CCGTGAAGCG
CCGGAACCGA CCGCTTCGGA GTACCGGCGC GTAGTCCAGG AGGTCGGTTT GGGGTTGCGC
ACCGAAGATG CGCTCGATAA TCTGCTCAAG CGCGTGCCGT CGGAAGACCT CGATCTGTTG
ATCACGGCGG TCAAAATCCA GATGGAGTCT GGCGGTAACC TGGCGCAAAT CCTCGACACG
ATTGGACATA CCATCCGCGA ACGAATTCGC ATCAAAGGCG AAATTGCAGT GTTGACGGCG
CAGGGGCGCA TTTCGGCATA TGTCATCACC GGCTTGCCAA TCGGTCTGGC GATTTTCATC
ACGGTGATCA ACCCGAACTA TATGTCGCCC ATGTTTTCGT TTGGCATGCC GCCTGAACAC
TGGTGCTGCC TGCCGGTCGC CGGGATTGTG ATGATTGTGA TCGGTTTCTT TGCGATTATG
AAGATTGTCG ATATCGAGGT GTGA
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| Protein sequence | MPISADLTRF IAPAAIFVVI LAVFALLARR SAGNASYEER LTQFAGRRTD QLQRSAKDQL
REIDKVVARG KRGSETQRNL ARADLKLTVT EFYAIKLLAA AVGAAVGAFI GRASWEAQLL
SGIVGFALFS FFPDLYVGYA AKQRVTKFNA QLGDTINMLA NSLRSGYSLL QSMELVSREA
PEPTASEYRR VVQEVGLGLR TEDALDNLLK RVPSEDLDLL ITAVKIQMES GGNLAQILDT
IGHTIRERIR IKGEIAVLTA QGRISAYVIT GLPIGLAIFI TVINPNYMSP MFSFGMPPEH
WCCLPVAGIV MIVIGFFAIM KIVDIEV
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