| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1680 |
|---|
| Symbol | |
|---|
| ID | 5539156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2161115 |
|---|
| End bp | 2162050 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640893817 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001431790 |
|---|
| Protein GI | 156741661 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2064] Flp pilus assembly protein TadC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000554602 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGCA TGTTGCCGAT GATCGGATTT GGCGCGCTGA TGCTGCTCGG CGTCGGGCTG
ATTGTATTTG GCATGCGGCG TTCGTCGCAG CCGGACGCGA TTAGCGACCG GTTGAGCCAG
TTTACCGAGC GGACCATGAC GCTCGAAGAA ATGGAACTGC AACAACCGTT CAGCCAGCGT
GTGCTCGTGC CGCTGACGAA GAGCATTCTG GCAAAACTCG GTGAGTATGG TCCCAAACAG
AGCGCCGAGC GCCTGCGCAT CAGCTTGGCG CAGGCGGGCA ACCCCGGCAA CCTGACTCCC
ATTCAGTTCA GCGGCATCCG CCTGGCGCTG GCTGTCATCC TGTTTCTGGT GGTTGGCGCG
GTCACTTTCC TCCAGGGTAT GGAGATGTCG CAGGCGCTGA TGTATACCGC CATCGGCGGA
GTGATGGGGT ATCTGCTGCC GGGCATCTGG CTTGGGCAGC AGATCAAGAA GCGCAAAAAG
GCGATTATCA AGGCGCTCCC CGATGCGCTC GACCTGCTGT GCATCTGCGT CGAAGCAGGT
CTGTCGTTTG ATCAGGCAAT GCAACGTCTG ACCGAAAAAT GGGAAGACCC GCTCTCCAAG
GAGTTCAAGC GCGTGCTCAG CGATACGCGG CTCGGCCGCC CCCGCCGCGA TGCGATGAAG
GATATGATCG ACCGCTGTGG CGTCGATGAT GTGCAGACCT TTATTGGCGC GGTGATTCAG
GCGGAACAGC TCGGTGTGTC CATCGGTCGC ATTTTGCGCA TTCAGTCGGA CCAGATGCGG
ATTCGACGCC GCCAGCGCGC CGAGGAGGAA GCGCATAAGG CGCCGATCAA GATGCTCTTC
CCCATGGTCT TCCTGATCTT TCCGGCGCTG TTCATTGTGA TTCTCGGTCC GGCGGTGCCC
CGGATTATGA AGTCGCTCGG CGGATTGGGG GGATGA
|
|---|
| Protein sequence | MMSMLPMIGF GALMLLGVGL IVFGMRRSSQ PDAISDRLSQ FTERTMTLEE MELQQPFSQR
VLVPLTKSIL AKLGEYGPKQ SAERLRISLA QAGNPGNLTP IQFSGIRLAL AVILFLVVGA
VTFLQGMEMS QALMYTAIGG VMGYLLPGIW LGQQIKKRKK AIIKALPDAL DLLCICVEAG
LSFDQAMQRL TEKWEDPLSK EFKRVLSDTR LGRPRRDAMK DMIDRCGVDD VQTFIGAVIQ
AEQLGVSIGR ILRIQSDQMR IRRRQRAEEE AHKAPIKMLF PMVFLIFPAL FIVILGPAVP
RIMKSLGGLG G
|
|---|
| |