Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1678 |
Symbol | |
ID | 5539154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2158350 |
End bp | 2160434 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640893815 |
Product | hypothetical protein |
Protein accession | YP_001431788 |
Protein GI | 156741659 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000109442 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTGCAAC ATCTGGTTGA TCGCTCTATC CGCATGGTTT TCGCTCATCT ACGCCGCAAC CGCCTGATAG CCGCCGCAAT CTTCACCGCG CTGCTGCTCC TCTACCTGCC GACTCTCACG CGGGTGCATA CGTTCGATGC GTTGTCGTAT GTGACGAGCG TCGAACGCAA GCCATGGACG GAGTTGTTCC ACCCGCACCA TCTGGCGTAT GGTCCGCTCG GTTCGTTGAT GCTGACGTTG AGCCGCGCCC TGGGATACGA TAACGGCGCC GCGTTGCCGA TGCAACTGGT GAATGCTGTT GCAGGAGCGT TGGGAGCGGC GCTCTTCTAT CTGACCGTAT GCGCGGCAAC CGGACGCGAT GATGTGGCGC TGCCGGCGAC GTTGTTGTTG GGTGTGGCGT ATGCCTACTG GTACTACGCT ATCGAGATCG AGGTCTATAC GCTTGCGACG TTCTTTCTGA TCGTCTGTCT GGCGTTGATG ACCCGCCCAA CACCCTGGAC GGCGCGCCGC TGCCTGGCGT TGGGTATTGC ACAGGGTGGC GCGGTGCTGT TCCATCAGAC GAATGTGTTG CTCTGTGCGC CGATTGTATT GAGCGCCCTG TCCGACCTGC GCACTGCCTG GAAACCTGGC AGTGCGCGCG CGGCCGTCGG TCGCTGGAGC GGGTATGCAG TCGCGCTGGC ATTGATCGTG GCGATGCCCT ACCTCTACGC CATGCTGGTC GTCAGCAATT TTCGCGCGCC TGCGGAGATG CTGGCATGGC TCACGGAGTA TGCGCGCACC GGATGGTGGG GCGGTCCGCT GACGGTTGCA ACGATTGCCG ATCTCGGCGC CGGTCTGAGC GACACGCTGG CGCAACCAGG GGGCGGCTGG TTCTACCTGG CGCTCGGCGG GGTCGTGGCG TGGGCGTGGG GCAGGCATTC CCAAATCCCG ACCGGCGAGC AGGATGATGC ACAGGGAAAC CGGGTCGCGC TCACGCCGCT GATCGCCTGG CTCGCAACGT ATGGCGCATT TTTCGCCTGG TGGGAACCGG ATAATATCGA GTTCTGGATC GCCAGTCTGC CGCCGGCATG CCTGGTGTTT GCCGCAGCGC TCGCGCGGGC GCGCTGGTGG AGCGCACCGG TCTGGACATC CCTGGCAATT GTTGGAGTCA TTGCGTGGGG CAATTATGGT TCTATCGTCC GGCGTGGCGA TCCGTCAACT GACCTGCAAC GCCTGATTGC GCGTGAACTG GCAGCGCGCA GCACACCGGC CGATCTGTTG ATTGTTCCTG ATGGATTGCA GGAACTCTAC CTGCCCTACT ATGAGCGCCG CGAGAACTTT CTGTCGCTCA ACCAGGCGCT GTTCGACAGC GGCGGATCAT GGGATGACGC CTGTGCGACG ATCCGCAGCC GGATTGCCAC GGCGCAACGC GCCGGCGCGG CGGTGCTGAT CGCCGATGAA GCGCTCCATC CGCCGCCACG GGTGCTGAAC CGCCACGGCA TCGCGCAAGC GCAGGTGGAT GGATGCTTTG CGCCATATCA CGCAACGCTG GTCGATCTTG CGTTGGCCGA ACCGCTTCCC TCCTACCGGC GGCTGCCTTC CGCAACTGAA ACGGCGCTGG CGGGCGGATG GGTCTTCGAG CGCGATGCGA TGGGCTGGCA GGCGTTTAAC GTCGCGGGTG AACGTCTTGA TGGGGGATGG CGCTTCCGTC CCGGCATCGA CCCGGCGCTG CTCAGTCCGC TCTTGAACCT CGATGCGCGC GAGGTGACTG CCATCGAGAT TCGGATGGCG AACGGCACGC GCGCCCGCGA CGCGCAACTC TTCTATGCCG GAATCGATGG CGCGTTGACC GAGGAATATT CCGTGCGCTG GCAACTGGCA GAGACAGCCG AAGCCGTAAC CTACGTCATC GATCTCCGGG AAGCGTCGGG ATGGCACGGC ATAATCACCC GCCTGCGGTT CGATCCGGTT GGGATGGGTG ACGACGGCGA GATTCGCGTC GAATGGGTGC GTCTGCGCCT GGCGACGCCA TCGGGGAAGC AGGCGCTCGC CAGTGTCGGT CGCCTAAGCT CGACTTTATC CATCTGTGCC GCTCACGCAG CATAG
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Protein sequence | MVQHLVDRSI RMVFAHLRRN RLIAAAIFTA LLLLYLPTLT RVHTFDALSY VTSVERKPWT ELFHPHHLAY GPLGSLMLTL SRALGYDNGA ALPMQLVNAV AGALGAALFY LTVCAATGRD DVALPATLLL GVAYAYWYYA IEIEVYTLAT FFLIVCLALM TRPTPWTARR CLALGIAQGG AVLFHQTNVL LCAPIVLSAL SDLRTAWKPG SARAAVGRWS GYAVALALIV AMPYLYAMLV VSNFRAPAEM LAWLTEYART GWWGGPLTVA TIADLGAGLS DTLAQPGGGW FYLALGGVVA WAWGRHSQIP TGEQDDAQGN RVALTPLIAW LATYGAFFAW WEPDNIEFWI ASLPPACLVF AAALARARWW SAPVWTSLAI VGVIAWGNYG SIVRRGDPST DLQRLIAREL AARSTPADLL IVPDGLQELY LPYYERRENF LSLNQALFDS GGSWDDACAT IRSRIATAQR AGAAVLIADE ALHPPPRVLN RHGIAQAQVD GCFAPYHATL VDLALAEPLP SYRRLPSATE TALAGGWVFE RDAMGWQAFN VAGERLDGGW RFRPGIDPAL LSPLLNLDAR EVTAIEIRMA NGTRARDAQL FYAGIDGALT EEYSVRWQLA ETAEAVTYVI DLREASGWHG IITRLRFDPV GMGDDGEIRV EWVRLRLATP SGKQALASVG RLSSTLSICA AHAA
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