| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1660 |
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| Symbol | |
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| ID | 5539136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2140753 |
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| End bp | 2141355 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640893797 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001431770 |
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| Protein GI | 156741641 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00392264 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGTTGCCG ACACAAACGT CGAACTTCCG GCAATCATCG CTCGCGCTCA AGCGGGCGAT
GAGATAGCGT TCGGCGAGTT GTACGCCCGG TATGCAAGAC ACATTTTGCG CTACATGTAT
GTGCGCACGC GCGAACCGGA ACTGGCGCAG GACCTGACGC AAGAGACGTT CATTCGCGTC
ATCAAAGGCA TTGGCGGGTT ACAGTATCGG GGCGAAAAGA TGTTTCTGGG CTGGTTGTAC
ACGATTGCAG GAAATGTCTT GATCGGTCAG ACGCGGCGGC GGCAGATATT CGCTTCTTCG
CTCGACGATA CCATCGATGT GACCGACCCG CGAGGCCAGG AGGCGGTCTC GTCCTTGTTT
GAGCGCCTAT CGTTGCAACA TGCCATCGCA CAACTGACCG TTGAGCAACA GCATGTCTTG
ATGTTGAAAT TTTTTGGCGA TATGACCAAT CAGGAGATTG CAACAACCAT CGGCAAAACC
GAAGGCGCAG TCAAGGCATT GCAGTATCGC GCTCTTCAGG CATTGCAGCA CATCCTCAAT
CAGGAATCGG CATCCGCTGA GTCATTGATG GCGCGTGCGG TCGGGGGCGC CGACGCGTCC
TGA
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| Protein sequence | MVADTNVELP AIIARAQAGD EIAFGELYAR YARHILRYMY VRTREPELAQ DLTQETFIRV
IKGIGGLQYR GEKMFLGWLY TIAGNVLIGQ TRRRQIFASS LDDTIDVTDP RGQEAVSSLF
ERLSLQHAIA QLTVEQQHVL MLKFFGDMTN QEIATTIGKT EGAVKALQYR ALQALQHILN
QESASAESLM ARAVGGADAS
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