Gene Rcas_1646 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1646 
Symbol 
ID5539122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2126210 
End bp2127385 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content59% 
IMG OID640893783 
Productresponse regulator receiver sensor signal transduction histidine kinase 
Protein accessionYP_001431756 
Protein GI156741627 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.930467 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0178265 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACG CTGTGACCAT TCTCTATATC GAAGATAACC GCGATAATCA GTTGTTGGTG 
CGGCGCATTC TGGAGTCGCG CGGGTATGCG CTACAGATTT GCGAAGACGG ACCTTCCGGC
ATTGCGTTGG CGCGAGAGAG CCAGCCGGCG CTCATTCTGG TCGATATCAA CATTGCGGGG
ATGGACGGCT ATGAGACCAC AACGCGCCTG CGCAGTCTGC CTCATTTACA ATCGACGCCG
ATTGTTGCCA TTACTGCTGA TGCGCGTCCT GGGACGCGCG AACGCGCGCT GGCTGCGGGA
TGTGATGGGT TTATCACCAA GCCGATCGAT CCCCGCTTGC TCCCCGAACA GATTGCCGAG
TTTCTGGGCG GGAAGCGTGA ACTGCTGCCC ACAAGCCTGG AGACGATCAT GCTGCGCGAG
TATAATGCCA GGCTTGTCGA GCGGCTCGAG CGGCAGGTGC GCGAACTGAG CGCGCGCAAC
GCTGAACTGC AAGAGCTTGA TCGTCTCAAG AACACCTTCC TTGCCACCCT TTCACATGAG
TTGCGCACGC CGCTGACAGC GATCCTCGGT TACCTGGAAC TGTTCGAACG GCGCACCCTT
GGATCGTTGA ACGACGTGCA GGGGCAGGCA ATCAACGTGA TTGCGCGCAA TGCCCGGACT
CTGTCGCGCA TCCTCAACAA CCTGCTCTAC TTGCAAGAGG TGCGCTCGAC TGAAATCCGG
CGCGCGCCGG TCGTCATCCA CGAGGTATTG CAGGAAGTCA TTGAAGACAT GCAACCGCTG
GCGCGCGCTG CGAATGTGAC ATTGTCCGCG TCCCTTCAAC CGACTGCTGT GTACATGGGC
GACCCGATTG GCATCAGCCA GGCATTGCGC GCCCTGATCG ACAACGCCAT TAAGTTCACT
CCCCCCTCCG GGCGGGTGGA TGTGACCCTG ATCGATGAAC CGTCGCGGGT GTTAGTGCGC
GTGGAAGACA CGGGGATCGG TATTCCCGCT GAAGCCCAGG AAAAGATTTT TCTCCCCTTC
TATCAGATCG ATGACACGCT GGCGCGCCCC TACAGCGGCG CCGGGCTTGG TCTGGCAATC
GCCAGGCATG TGGTCGAAGC GCATGGCGGT CATCTGACGG TGCGGAGCGT TGTTCAGGCT
GGCAGCACCT TTACGGTTGT TCTGCCGCGG GAGTAG
 
Protein sequence
MIDAVTILYI EDNRDNQLLV RRILESRGYA LQICEDGPSG IALARESQPA LILVDINIAG 
MDGYETTTRL RSLPHLQSTP IVAITADARP GTRERALAAG CDGFITKPID PRLLPEQIAE
FLGGKRELLP TSLETIMLRE YNARLVERLE RQVRELSARN AELQELDRLK NTFLATLSHE
LRTPLTAILG YLELFERRTL GSLNDVQGQA INVIARNART LSRILNNLLY LQEVRSTEIR
RAPVVIHEVL QEVIEDMQPL ARAANVTLSA SLQPTAVYMG DPIGISQALR ALIDNAIKFT
PPSGRVDVTL IDEPSRVLVR VEDTGIGIPA EAQEKIFLPF YQIDDTLARP YSGAGLGLAI
ARHVVEAHGG HLTVRSVVQA GSTFTVVLPR E