| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1631 |
|---|
| Symbol | |
|---|
| ID | 5539107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2107875 |
|---|
| End bp | 2108945 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640893768 |
|---|
| Product | basic membrane lipoprotein |
|---|
| Protein accession | YP_001431741 |
|---|
| Protein GI | 156741612 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0120157 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGC CGGTTTCTCT CATCATCCTG CTGCTCGTCT CGGTGTTGAT TGCCGCATGT
GGCGGGCAGC AGACAGTCAC CCCAACGACC GCCCCCACCG GCGCAACTGC CGCGCCGGCC
AGACCCACTG AAGCAGATTG CCCCAAACCC GAAGTTCTGT GTGTCGGTCT CGTGACCGAC
GTGGGCGAGA TCGACGACAA GAGCTTCAAC CAGTCCGCCT GGGAAGGGGT CAAGCGCGCC
GAAGCCGAAT TGGGCGCGAT CGTCAACTAT GTCGAGACAA AAGACGCCAA GGATTATGAT
GCGAACATCG CGTTGTTCAC CGAGAAGGGG TACGATGTGA TCGTTACCGT TGGCTTTGCG
CTCGGCGAAG CGACGGCGAA GGCTGCGGCG GAGAATCCGA ATGTGAAGTT CATTGGCGTC
GATCAGTTCC AGGCAACGGA AATTCCGAAT GTTGCGGGCC TGATCTTCGC TGAGGACAAG
GCGGGTTTCC TGGCGGGCGT GCTTGCAGCG GAAATGTCGA AGAGCAACAA GATCGCCGCT
GTGCTCGGCA CCAACCTGGT TCCGCCGGTT GTCGCCTTCA AGGAAGGGTA CGAGAATGGC
GCGAAGTATG TCAAGCCCGA TATCCAGGTG ATCTCGACCT ACCATCCGGG TGGTCTCGAT
ACGGCGTTCA CCGACCCGAA GTGGGGCGCC GACCAGGCAA AACTGGCGAT TGACCAGGGC
GCCGATGTGA TCTTCGGCGC TGGCGGCAAG ACTGGCAACG GCGCGCTGAT CGAGACGGCA
GCCAACCAGG GGGTGTACTG CATCGGTGTC GATACCGATC AGTGGGAGAC GGTGCCGGAG
GCTCGCCCGT GCCTGATCTC GAGCGCAATG AAACTGATTA CGCCGGGTGT GTTCGACCTG
ATCAAGAAGG CGCAGGAAGG CGCGTTCCCT TCTGGCAATT ATGTCGGTGA AGTCGGGCTG
GCGCCGTTCC ACGACTTCGA TGCCCAGATC CCGGCTGAGG TGAAAGCGAA GATCGCCGAG
ATCGACAAAG GCCTGCGCGA TGGTTCAATT TCGACGGGAT ATACTCCGTA G
|
|---|
| Protein sequence | MKRPVSLIIL LLVSVLIAAC GGQQTVTPTT APTGATAAPA RPTEADCPKP EVLCVGLVTD
VGEIDDKSFN QSAWEGVKRA EAELGAIVNY VETKDAKDYD ANIALFTEKG YDVIVTVGFA
LGEATAKAAA ENPNVKFIGV DQFQATEIPN VAGLIFAEDK AGFLAGVLAA EMSKSNKIAA
VLGTNLVPPV VAFKEGYENG AKYVKPDIQV ISTYHPGGLD TAFTDPKWGA DQAKLAIDQG
ADVIFGAGGK TGNGALIETA ANQGVYCIGV DTDQWETVPE ARPCLISSAM KLITPGVFDL
IKKAQEGAFP SGNYVGEVGL APFHDFDAQI PAEVKAKIAE IDKGLRDGSI STGYTP
|
|---|
| |