Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1617 |
Symbol | |
ID | 5539093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2086594 |
End bp | 2088651 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640893754 |
Product | shikimate/quinate 5-dehydrogenase |
Protein accession | YP_001431727 |
Protein GI | 156741598 |
COG category | [R] General function prediction only |
COG ID | [COG5322] Predicted dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGGA TTGTAAGCAT CAGTCTTGGT TCCGCACGAC GCGATTATCA GTTCGTGACA ACCGTCCTGG GGCAACAGAT CGAGGTGCGG CGCATTGGCG CCAATGGCGA TACGGCGCTC GCAGCCTCGC TGGTGCGCGA CTTCGACGGC AAAGTGGATG CTATCGGATT GGGAGGTCTG ACTCCCGTGT TCCACGTCGG CGCAGCGCGC TACCCGCACC ACGAAGCACT CACGATTGCG CGCGAGGCAC GCCGTACACC GGTCGTCGCC GGCAACCTGA TCAAGCAGAC CCTCGACCGG TGGTGCGTGC AGCAGGCGAA CCAGGCGCAG CGCGGTATGT TCAACTATCG CCGCATCCTG GTAACGAGCG GCATCGACCG TTATGCGCTG GCGCAGGCAC TGGCGCAGTA CGACGCAGAG TTGCGCTTTG CCGATCCGGT CGTTCACAGC GGACTGCCGT TTCTACCGCT GCCGCGGTCC ATCCCGCAGC TCGACATGTA TGCCGCAACA ACGCTGCCAA TCGCAGCGCT CCTGCCCTAC CGCGTGCTGC ATCCGGTGGC GCTGGGCAGC GAAGGGCACG ATGCGCGCGC CGAAAAACAC TTCGCCTGGG CGGATGTCAT TGCCGGCGAT TTTGCCTACA TCCGGCGTTT CGCCCCGCGC GATCTGAACA ATAAAGTCAT TGTCACCGAT GATCCGTCGC CGGAAGAGAT CGAGGACCTG CGCGCGCGTG GCGTCCGCAC GCTCGTTACG CTCTCGCCGC GCCTGGAGAG CGCCGATAAG ACGCACCGCC CCTTCGTCGC CGCTGATGTG CTCGAAGCGA TTGTCGTGGC GATTCTTGAG TCAGGTCCGA CGCCAACTGA GGGCGATATC ATCAATTTCA TCGATGAGGC GGATTGGGAA CCGGAGGTGA TGACGTTGAG CGACACGGCG GAGAAGCCAC GGTTTGCCTT CGTCATCCAT CCGCTGTCGC CGAAGTATAT CGCCAATCAC CCGCGTTTCC GTTTTACGCG CTACCTGCCA GAACGCCTGG TCGAACGGGT GGCGGCGCAT TTCCCGCCCA TGTACATCTC GAAAATCCGC GGCATTCGCT CACAGGCGAC CGGTGAGGAA ATCGAAGGAT TGTTGTTCAC CCTGGGGGCG ACGCCACGCG AGTTGATGCG CCGCGACACG GCGTTCACCT ATCGCCGCCT GATCAAGTGC GCTCGCATGG CGGAGCGGAT GGGCGCGAAA ATCATGGGGC TTGGCGCGTT CACGTCGGTG GTCGGTGATG CAGGCATTAC CGTTGCACAG AAGAGCGACA TCGGCATTAC ATCGGGCAAC TCGCTGACGG TTGCGGCGAC GCTCGAAGCC GCCAAGCAGG CGGTCATCAA GATGGGCGCG ACCGACCTGA CGCGCGGCAA GGCAATGGTC GTCGGCGCAA CCGGTTCAAT CGGCTCGGTC TGCGCCCGGT TGCTGGCACA GGCGATCGGT GATGTCGTGC TGGTTGCACC GCGTGTCGAA CGTCTGCTGG CGCTCAAGAA GCAGATCGAG GCGGAAACGC CAGGCGCGCG GGTGACGGCG GCGACCAGCG CCGATGCGTA CCTGGCGGAG TGCGATCTGA TCGTCACCAC CACGTCAGCG TTGAGCGGTC GAGTGATCAA TGTCGATAAG CTCAAGCCCG GCGCCGTTGT GTGCGATGTG GCCCGCCCGC CCGATGTCAA AAAAGAAGAT GCCGCCCGCC GCCCCGATGT GCTGGTGATC GAGTCAGGTG AAATCCTGCT GCCGGGTGAA CCCGATTTTG GCTTCGACAT CGGACTGCCG CCGGGCACGG CATATGCCTG CCTCTCCGAG ACGGCGCTGT TGACGATGGA ACATATGTAC GGCGATTACA CCCTTGGGCG GAATATCGAC ATTGAGAAGG TCAAGGAGAT GTATCGCCTG ATGAAGAAAC ATGGGCTGCA ACTCGCCGGT CTGCGTTCGT TCGATGAGTA TATCACCGAC GAGATGATCG CAGAAAAACG ACGCCTGGCG GACGAGCGAC GTCGTCAACT CGGGATGCCA GTTGCAGCAA CACGGTAA
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Protein sequence | MKRIVSISLG SARRDYQFVT TVLGQQIEVR RIGANGDTAL AASLVRDFDG KVDAIGLGGL TPVFHVGAAR YPHHEALTIA REARRTPVVA GNLIKQTLDR WCVQQANQAQ RGMFNYRRIL VTSGIDRYAL AQALAQYDAE LRFADPVVHS GLPFLPLPRS IPQLDMYAAT TLPIAALLPY RVLHPVALGS EGHDARAEKH FAWADVIAGD FAYIRRFAPR DLNNKVIVTD DPSPEEIEDL RARGVRTLVT LSPRLESADK THRPFVAADV LEAIVVAILE SGPTPTEGDI INFIDEADWE PEVMTLSDTA EKPRFAFVIH PLSPKYIANH PRFRFTRYLP ERLVERVAAH FPPMYISKIR GIRSQATGEE IEGLLFTLGA TPRELMRRDT AFTYRRLIKC ARMAERMGAK IMGLGAFTSV VGDAGITVAQ KSDIGITSGN SLTVAATLEA AKQAVIKMGA TDLTRGKAMV VGATGSIGSV CARLLAQAIG DVVLVAPRVE RLLALKKQIE AETPGARVTA ATSADAYLAE CDLIVTTTSA LSGRVINVDK LKPGAVVCDV ARPPDVKKED AARRPDVLVI ESGEILLPGE PDFGFDIGLP PGTAYACLSE TALLTMEHMY GDYTLGRNID IEKVKEMYRL MKKHGLQLAG LRSFDEYITD EMIAEKRRLA DERRRQLGMP VAATR
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