| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1609 |
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| Symbol | |
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| ID | 5539085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2077699 |
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| End bp | 2081088 |
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| Gene Length | 3390 bp |
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| Protein Length | 1129 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893746 |
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| Product | helicase domain-containing protein |
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| Protein accession | YP_001431719 |
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| Protein GI | 156741590 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATGC TTATTCGGCC CGGCGACATT GTCCAGGCCT CACGTTGGCC GGAACCGCTC
AAGGTGGACC TGGTAGAGCC ATTCGGCGAT GACTATGTGC GCCTGGTAGG GGTGTTGATG
AATGCCCGGA CCCATATTGA CCAGGTTTTA CCCCTCCAGG AGGTGGCGCA GTTGCGCCCC
CTTCGGCTGG ATGGACAGTT TCATGCATCG CCGCGCCAGG TTTTTTTGGG ATTGGAAGCC
CGCCGTTATC GCTACGCCTC GCTCTATGAC CCTCTGCTGG CAATGAACAT CTCCAAAGTG
GACCCGCTGC CCCATCAAAT CGAAGCGGTT TACGGGTATG TCCTGCATCA GCCGCGTGTG
CGCTTTCTGA TTGCCGATGA CCCAGGTGCC GGGAAGACCA TCATGGCCGG GCTGGTCATC
AAGGAAATGA AATTGCGCGG GCTGGTACGG CGCATCTTGA TTGTCGCTCC CGGCCACCTG
AGAGACCAAT GGCAGCGTGA GTTGAAAGAA CGCTTCGACG AGCGTTTTGT GCTGATGGAC
CGCCAGACCA TGCGCAACCG CTTTGGCGAG AACGCCTGGG AGAGCGAGTT CCAGGTAATC
ACCTCGCTCG ACTTTGCCCG CCAGGAGGAT GTGATGCAAG CCCTGGCCGG GGCGCACTGG
GACCTGACCA TCGTGGATGA GGCTCACAAG ATGGCCGCCT ATAAATACGG CGACAAAATG
GAGAAGACCA AACGCTACCG CCTGGGTGAG TTGCTCTCAC GGAACAGCAC ACAATTGCTT
TTCCTGACTG CCACTCCCCA CCGCGGTGAC CCGGAGAATT TTCGCCTGTT CCTGGACTTG
CTTCAGCCCG GCGCCTTTGC GACCGTGGAC ATGCTCGATG AATCCATCCG CGCCGGGGAC
AATCCGCTTT TCATCCGCCG CCTGAAAGAG GACTTGAAAG ACTTTGAGGG CAAGCCGCTT
TTCCTGCCGC GCCAGGTCAA AACATTGACC TTTGACCTGG GCGTAGAATC GCCCGCCGAA
AAAGAACTCT ACAACGCGCT CTCGCGCTAT GTCAATGAAC AATACAACAA AGCCCTGGCC
AGCGACCGGC GCCGTAATGT AGCCTTTGCC ATGGTTATCT TGCAGCGGCG GCTGGCCTCC
AGCACTTATG CTCTTTATCG TTCCCTCGAA CGGCGTAAGA GGCGGCTCGA AGAGATGCGT
CAACAGGCCA ACGCCTTCAA GGAAGGCAGA CTTAGTACCC CAGCATCCGC CTTTTCGCTG
GATGACGTGG AAGACTTGAG CGAAGAGGAA CGCTGGGAAC AGGAGGCAAT TTGGGAAACC
TTGAGCGGCG CCGAGAACCG CGCTGAACTG GAAGCCGAAC TTCAGACCCT GGAACAACTC
CTGCAGCAGG CGCGTGCCAT CATCGAGCAA GAAAACGAGG TCAAGTTACG CCATTTCCGC
CAGGCCCTGC GCACCCTGCA GGAACAAGAC CCCGGCGCCA AAATCCTGAT TTTCACCGAA
TCGCGCGATA CGCTTGATTA CCTCGAACGG CGTATGCGCG ATTGGGGCTA CCGCGTATGC
ACCATTCACG GCGGGATGCC ACTGGATGCC CGCATCGAAG CCGAGAAAAC CTTCAAGAAC
GAAGCCCAGG TGATGGTGGC GACCGAAGCC GCAGGCGAAG GCATCAACCT GCAATTCTGC
CACCTCATGA TTAACTACGA CATCCCCTGG AACCCCAACC GCCTGGAACA GCGCATGGGA
CGCATCCACC GCTACGGTCA GACGCGCGAG GTGACCATCT TCAACCTCGT GGCCGCCGAT
ACGCGCGAAG GCCGCGTTCT GCATCGCTTG TTCGAGAAAC TGGATGAGAT TCGCTCCGCC
CTGGGCAGTG ACCGCGTCTT CGATGTGATT GACGAACTGT TCCCCGGCCG CGACCTGGCC
CGACTTCTGG CCGACGCCGC CGCCAACGCC CGCACGCTGG AGGACATCCT GCGCGAAATC
GAAATCCAGG TGGACGAGAC TTATCTGCGC CAGGTGCGCG ACAAGTTGGG TGAAAGCCTG
GCCACACGCT ACATTGACTA CACCCGCATT CAGGAGATGA ACGTCCGCGC TCGCGAGCGC
CGTCTGATCC CCGAATATAC CCAGGCGTTC TTCCAGAAAG CCTGGGAGCA CCTGGGTGGC
GAGATGCGCC CGCGCGCCGA GGTGCGCCGC CGTGGCTTTT TCACCCTGGA GAAGATCCCC
GTACCGCTGC GCACCCTGGC CGAGCAAGAT TCCTTCAAGA AGCGCTTCGG AAATTTGCAA
AAGCGTTATC CGCTGGTGAC TTTTGACAAA GAACTCGCCA TGAAGGAATC ACAGGCCGAG
TTCGTTTCGT TTGGACATCC CCTCTTCGAG GCCGTGTTGG AATGGGCCGA ACAAAGCCTG
GTTGAGATCC TGGTGCAGGG CGCAACCTTC CTCGACCCCG ATGGTCGGCT GGACGGCGTC
CTGCTCTTTT ACGAAGGGCA GATCAATGAC GGGTTGGGAC AGGTAGCCGG AAAACGTCTG
TTTTCGCTTT TCATCCCCCA TGGAAATGGC CGGCCGCAGC CAATGGACCC CGCCATCCTG
TGGGACCTGG CGCCCGCCGA GACCCCCGCC GCAGCGGAGA GCCTTGACCT GGAAGCCCTC
AAACGGCAGG CTCAGGGCTG GTTGTTGACC CACCTGGAGT CCTATCGCCA GGAACTGGCT
GCCGAGCGCG AGCGTGAGGC GCACATCAAG CGCAAATACG GAGTGGAATC GCTGCGCTAC
CTGATTCTCG ACCTGGATAA CGACCTGGTC CATTTGCAGG AGCGCGCCCA GGCAGGCGAG
GATGTTTCAC TGGTCATGTT CAACAAGGAA CAGCAGAAAA ATGCTTACTT GCAGGCGCTC
AAAGACCTGC AGGAAACGCT CGAGCGCGAG CGCCAGTTGA CGCTGGAGAC GCCGCGTTTT
CTCTCCGCCG TGCGGGTGCT GCCGCTGATT GCACCGGCAG GGGGAGGAAC GGACGAGATG
CACAGCGACT CAGCCATCGA GCAGGCCGGG ATGGACCTCG TTCTGCGCTA TGAGCGTGAG
CATGGCCGTC AGCCGCAGGA CGTGGCCGCT GAGAACCTGG GCTATGATGT CCTTTCGCTG
GAGCTGCCAG GCGGGACGCG GCGCTACATC GAGGTCAAGG CCCGCGCCGG GATCGGGCGC
GTGGCGCTGA CCCAGAACGA ATGGTTCACC GCTCATCGCC TGGGCGAGGA TTATTTCCTG
TACGTGGTCA TGAACGCCGC CACGGCGCAG CCCGACCTGT ACATCGTCCG CAACCCTGCC
ACCCGCCTTG CGCCCGAAGA ACAGCATGAA GTCCGCTATC TCCTGCCTGC CGAAGCCATT
CAATCCATAG CCGAAAGAGA AGACTTATGA
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| Protein sequence | MDMLIRPGDI VQASRWPEPL KVDLVEPFGD DYVRLVGVLM NARTHIDQVL PLQEVAQLRP
LRLDGQFHAS PRQVFLGLEA RRYRYASLYD PLLAMNISKV DPLPHQIEAV YGYVLHQPRV
RFLIADDPGA GKTIMAGLVI KEMKLRGLVR RILIVAPGHL RDQWQRELKE RFDERFVLMD
RQTMRNRFGE NAWESEFQVI TSLDFARQED VMQALAGAHW DLTIVDEAHK MAAYKYGDKM
EKTKRYRLGE LLSRNSTQLL FLTATPHRGD PENFRLFLDL LQPGAFATVD MLDESIRAGD
NPLFIRRLKE DLKDFEGKPL FLPRQVKTLT FDLGVESPAE KELYNALSRY VNEQYNKALA
SDRRRNVAFA MVILQRRLAS STYALYRSLE RRKRRLEEMR QQANAFKEGR LSTPASAFSL
DDVEDLSEEE RWEQEAIWET LSGAENRAEL EAELQTLEQL LQQARAIIEQ ENEVKLRHFR
QALRTLQEQD PGAKILIFTE SRDTLDYLER RMRDWGYRVC TIHGGMPLDA RIEAEKTFKN
EAQVMVATEA AGEGINLQFC HLMINYDIPW NPNRLEQRMG RIHRYGQTRE VTIFNLVAAD
TREGRVLHRL FEKLDEIRSA LGSDRVFDVI DELFPGRDLA RLLADAAANA RTLEDILREI
EIQVDETYLR QVRDKLGESL ATRYIDYTRI QEMNVRARER RLIPEYTQAF FQKAWEHLGG
EMRPRAEVRR RGFFTLEKIP VPLRTLAEQD SFKKRFGNLQ KRYPLVTFDK ELAMKESQAE
FVSFGHPLFE AVLEWAEQSL VEILVQGATF LDPDGRLDGV LLFYEGQIND GLGQVAGKRL
FSLFIPHGNG RPQPMDPAIL WDLAPAETPA AAESLDLEAL KRQAQGWLLT HLESYRQELA
AEREREAHIK RKYGVESLRY LILDLDNDLV HLQERAQAGE DVSLVMFNKE QQKNAYLQAL
KDLQETLERE RQLTLETPRF LSAVRVLPLI APAGGGTDEM HSDSAIEQAG MDLVLRYERE
HGRQPQDVAA ENLGYDVLSL ELPGGTRRYI EVKARAGIGR VALTQNEWFT AHRLGEDYFL
YVVMNAATAQ PDLYIVRNPA TRLAPEEQHE VRYLLPAEAI QSIAEREDL
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