| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1597 |
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| Symbol | |
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| ID | 5539073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2051203 |
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| End bp | 2055711 |
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| Gene Length | 4509 bp |
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| Protein Length | 1502 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893735 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001431708 |
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| Protein GI | 156741579 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGAGA TCAACGACTT CAGCGCTATT CGGATTAGTC TCGCGTCGCC GGAAGACATT
CTGAGCTGGT CGCACGGCGA AGTCACCAAG CCGGAGACGA TCAATTATCG CACGCTGAAA
CCTGAGCGTG ATGGTTTGTT CTGCGAACGC ATCTTCGGTC CGACGAAGGA CTGGGAATGC
TACTGCGGCA AGTATAAGCG CGTGCGCTAC AAAGGCGTCG TCTGCGATAA GTGCGGCGTT
GAGGTGACAC GCTCAAAAGT GCGGCGCGAG CGGATGGGGC ATATTTCGCT GGCGTCGCCG
GTGTCGCATA TCTGGTTTGT CAAAGGTACG CCGAGTCGCC TTGGTCTGCT GCTCGACATT
TCGCCACGCA ACCTGGAGCG GGTGTTGTAT TTCGCGTCGT ACATTATCGT CCATGTCGAT
GAGGAGGTCA AGGCGCATCG GCGCGAAGCA TTGCAGGCGG AGTATCGGGA AAAGCGTGAG
CGTATTCAGG CGGAAGCCGA GAGCCGGCAG ATTGAGCTTT CGACCCAATT GACCCAGGAC
CTGGGCGGGA TGGAGAGCGC CCAACTCTCG ACGCAGCGGC GCATCGAGGA GGAATACCGG
CGACTACGCG ATGAGATCAG CGCCGAGGCG GAGCGGTTGC GCACCGATCT CGAAGAAAAA
CAGGGTGAAG CGGCTGAGGA GGATATTATC TTCCGTGGGA CGGTGCTCGT TGAAGAGGGT
GAGAGTATTA CCGAAAAGAC TCTCGATGCG CTCGACGAAC TGCTCGATCA GGAACTGGAA
ACGCTTGAAC AACGGAAGCA GCGCGATCTC GAGGATGCCG AGCAATTGAC CGGCGCCGAA
CGTGAGCGCA AAGAGTACGA AGCCAGCCAG GAGCGTGAAC GCCTCCAGGA GCGTCTGCAA
AGCGAACTCG ACCGATTGGT GCGCGAGGAG AAGGAGCGCC TCGAACAACT TGACTCGATC
AAACTGAAGC GCATCCTCAA CGAACAGGAG TACCGCGCGC TGCGCGAGAT TGCGCCGGGT
GCGTTTCGCG CCGATATGGG CGCCGGGGCG ATCCGCGACC TGATCGTGCG CACGGTTGAT
CTCGATAAAC TGGCGGAGGA ATTGCAGAAC GAGGTCTACA CCACGCAAGG TCAGCGACGC
AAAAAGGCGA CGAAGCGCCT GCGGGTGGTG GAGGCGTTCC GCAAGAGCGG TAATCGCCCC
GAGTGGATGA TCCTCACGGT GCTGCCGGTC ATTCCGCCCG ATCTGCGCCC GATGGTGCAA
CTCGACGGCG GTCGCTTCGC CACCAGCGAC CTCAACGATC TCTATCGGCG CGTGATCAAC
CGCAACAACC GCCTGAAGCG CCTGATGGAA CTCAATGCGC CGGAGATTAT TGTGCGCAAT
GAGAAGCGAA TGCTCCAGGA AGCGGTTGAT GCCCTGATCG ATAATGGTCG CCGCGGGCGC
GCAGTTTCCG GCAAGGGCAA GCATCGCTTG AAGAGCCTGA GCGATATGCT CAAGGGGAAG
CAGGGGCGTT TCCGCCAAAA CCTGCTCGGC AAACGTGTCG ATTACTCTGG TCGCTCGGTG
ATTGTGGTCG GACCAGACCT CAAACTACAC CAGTGCGGTC TGCCGAAAAA GATGGCGCTC
GAGTTGTTCA AGCCGTTCGT CATGCGCCGC CTGGTGGAAA AAGGCGCCGC GCACAATATC
AAGAGCGCCA AGCGCATCGT TGAGCGCGTC CGCCCTGAGG TGTGGGACGT GCTCGAAGAG
GTGATCAAAG ATTATCTGGT GCTGCTGAAT CGCGCGCCAT CGCTGCACCG CCTCTCGATC
CAGGCGTTTG AAGCCAAACT GATCGAGGGG TCGGCCATTC AGTTGCATCC GCTCGTCTGT
GCAGCGTTCA ACGCCGACTT CGACGGCGAC CAGATGGCGG TGCACGTGCC GCTGTCGCGC
AAGGCGCAGG AAGAAGCGCG CATGCGCATG CTCTCCAAGT ACAACCTGTT GTCGCCGGCT
ACCGGCGACC CGATCATCAC GCCATCGCAG GACATCGTGC TTGGGTGCTA CTACCTGACG
ATGGTCCGGG ATGGTGCGAA GGGAAGCGGC AAGATGTTCG CCTCGATTGA TGAGGCGCTG
CTGGCATACG ATAAGGGGCT GGTCGATATT CAAGCGCCGA TCTTCGTGCG CATGACGGGA
ACGCTGCACG GTGAGAGTGA TCGCCCGGTG CGCATCCTCA ACTCTGATGA GAACGGCGCG
CCGCGTATGC TGCTGGAAAC GACAATCGGG CGGATCATTT TCAATAATGA ACTGCTCGAG
CCGCTGCGCT TCCGCAATCG CTTGATCGCC AAGAAGGGTC TGCGTGAGAT TATCGCCGAT
TGCTACAAGT ACTACACGAA CCTCAATAAC CTGACCGAGG CGGACCTCGA TACGATTCGC
ACCATGTACG GTGATCGCCC GCGCGATGAC CTGGCACGCT ACTTTGGGTC GGAAATGACG
GCAAGCCAGG CGGATCGGAT CAAGACGCTT GGCTTCAAAT ATGCGACGCG CGGCGGTATG
ACGATCGGTG TGGATGACAT CGAAATTCCG CCGAAGAAAC AGGAGATTCT TGCCGAAGCC
GAGAAGCGCG TCGCCGAGGT GGAGCGGCAG TTCCGACGCG GTCTGATCAC TGAAGAGGAA
CGCTACCGCG AAATTGTCGA GATCTGGCAG AACGCCACCA AGCAGACGAC CGAAGCGGTC
AAGCAATATC TGAACCCATT CGGTCCGGTG GCGATGATGG TCAACTCCGC TGCCCGCGGC
AATATTAATC AGTTGAGCCA GATGGCCGGC ATGCGCGGGT TGATGTCCGA TCCGACAGGA
CGGATCATTG AACTGCCGAT CAAGAGTAAT TTCCGTGAAG GGCTCTCGGT GCTCGAATAT
TTCGTGTCAA CCCATGGTGG GCGCAAGGGT CTGGCGGACA CGGCGCTGCG CACGGCGGAC
GCCGGGTATT TGACGCGCCG CCTGATTGAT GTTGCGCAGG ATAATATCGT GACGATCGAT
GACTGCGGTA CGGATGAAGG TTTGTGGATC TACCGCTCCG ACGACCGCGA GGTGTTGCAG
GATTTCGAGC AGCGCATCCT TGGGCGTCTG CTGGCGGCGC CGCTCGTCGA TCCGCGCACC
GGCGAGGTCC TTGCCGATCG CAACGCGGAG ATTGACGAAG CATTGACCCG TCGGTGCAAG
GAACTCGGCA TTGATGCGGT GTATGTCCGC TCGCCGCTGG CATGCAAAGC CGACTATGGC
ATCTGCCGCA TGTGCTATGG GCGCAACCTG GCAACCGGCA AACTGGTCGA TATTGGCGAA
GCGGTCGGCA TCATCGCCGC ACAGTCGATT GGTGAGCCGG GCACGCAGTT GACCCTGCGC
ACGTTCCATA CCGGCGGCGT GGCATCGGCT GACGATATTA CGCAGGGTCT GCCGCGCGTC
CAGGAAATCT TTGAGGCGCG CACGCCCAAA GGCAAAGCGA TCCTGGCGGA AATCGACGGC
ATTGTCGAAT TGGTGCGTGA GGACGAGGTG CGGAAGATTC GCGTCGTCTC AACTGACCTC
TACACCGATG ATCACGTATT GCCACCGCAC TATGAGCCGG TGGTCGCAGA TGGAGCACAG
GTGAATGAGG GGGATGTGCT GGCGCAGAGT AATCGCGCCG ATCTGGACAG CGAGCCGATT
GTGGCGCGTC TTGCAGGGGT CGTGCGGATC GGCGCCGGAC AGATCAGTGT CATCAACGAA
GAGCGCGAGG TGCGCGAAGT GATTGCGCCG CATACGGCGC GCCTGGCGGC CGGCATCGAG
AATGGCGCCC GCGTTGTCGC CGGGCAGCAC CTGACGGAAG GATCAGCCGA TCCGCAGGAA
CTGCTGGCGC TCCAGGGGCG CGAAGCGGTG CAACGCTACC TGGTCAACGA GGCGCAGAAA
GTGTATCGTT CCCAGGGTGT TGATATCAAC GATAAGCACA TCGAAGTCAT TGTGCGCCAG
ATGCTGCGCC GTGTGCGGAT CGAGGAACCG GGCGATACGG ATTACCTGCC AGGCGAGTTG
ATCGACTCGA CGGAATTTGT GCGCCGGAAT GCCGAGATTA TCAGCCAGGG GGGTGAGCCG
GCTACGGCAT CGACGATGCT GCTGGGCATC ACCAAGGCAT CACTCACCAC TGATAGTTTC
CTGGCAGCCG CGTCGTTCCA GGAGACAACC CGCGTGTTGA CCGAAGCAGC CATCACGGGC
AAGGTGGATT ACCTGCGCGG TCTCAAGGAG AATGTGGTCA TCGGCAAATT GATCCCGGCA
GGAACCGGAA TCGAGAAACG ACGCCAACTG GCTGAAGAGG TCATCGGCGA ACTGGCGAAC
GTCGTCCCGA CATCCACGGC GGTTGTCGAA CAGGAGCGGC CCGAACGCGA AGCGGATGAG
GCGCTGCGAC GCAGGCTGCG GGCGCTGATC GGCAGCGATG ACAATGGCGA TGAGGTGGGG
AAGAACGGCG AATTCGCCGA TGAGACGCCG TTCACCGGTG ATAGCGACGA CCGCGACAAC
GAGATCTGA
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| Protein sequence | MLEINDFSAI RISLASPEDI LSWSHGEVTK PETINYRTLK PERDGLFCER IFGPTKDWEC
YCGKYKRVRY KGVVCDKCGV EVTRSKVRRE RMGHISLASP VSHIWFVKGT PSRLGLLLDI
SPRNLERVLY FASYIIVHVD EEVKAHRREA LQAEYREKRE RIQAEAESRQ IELSTQLTQD
LGGMESAQLS TQRRIEEEYR RLRDEISAEA ERLRTDLEEK QGEAAEEDII FRGTVLVEEG
ESITEKTLDA LDELLDQELE TLEQRKQRDL EDAEQLTGAE RERKEYEASQ ERERLQERLQ
SELDRLVREE KERLEQLDSI KLKRILNEQE YRALREIAPG AFRADMGAGA IRDLIVRTVD
LDKLAEELQN EVYTTQGQRR KKATKRLRVV EAFRKSGNRP EWMILTVLPV IPPDLRPMVQ
LDGGRFATSD LNDLYRRVIN RNNRLKRLME LNAPEIIVRN EKRMLQEAVD ALIDNGRRGR
AVSGKGKHRL KSLSDMLKGK QGRFRQNLLG KRVDYSGRSV IVVGPDLKLH QCGLPKKMAL
ELFKPFVMRR LVEKGAAHNI KSAKRIVERV RPEVWDVLEE VIKDYLVLLN RAPSLHRLSI
QAFEAKLIEG SAIQLHPLVC AAFNADFDGD QMAVHVPLSR KAQEEARMRM LSKYNLLSPA
TGDPIITPSQ DIVLGCYYLT MVRDGAKGSG KMFASIDEAL LAYDKGLVDI QAPIFVRMTG
TLHGESDRPV RILNSDENGA PRMLLETTIG RIIFNNELLE PLRFRNRLIA KKGLREIIAD
CYKYYTNLNN LTEADLDTIR TMYGDRPRDD LARYFGSEMT ASQADRIKTL GFKYATRGGM
TIGVDDIEIP PKKQEILAEA EKRVAEVERQ FRRGLITEEE RYREIVEIWQ NATKQTTEAV
KQYLNPFGPV AMMVNSAARG NINQLSQMAG MRGLMSDPTG RIIELPIKSN FREGLSVLEY
FVSTHGGRKG LADTALRTAD AGYLTRRLID VAQDNIVTID DCGTDEGLWI YRSDDREVLQ
DFEQRILGRL LAAPLVDPRT GEVLADRNAE IDEALTRRCK ELGIDAVYVR SPLACKADYG
ICRMCYGRNL ATGKLVDIGE AVGIIAAQSI GEPGTQLTLR TFHTGGVASA DDITQGLPRV
QEIFEARTPK GKAILAEIDG IVELVREDEV RKIRVVSTDL YTDDHVLPPH YEPVVADGAQ
VNEGDVLAQS NRADLDSEPI VARLAGVVRI GAGQISVINE EREVREVIAP HTARLAAGIE
NGARVVAGQH LTEGSADPQE LLALQGREAV QRYLVNEAQK VYRSQGVDIN DKHIEVIVRQ
MLRRVRIEEP GDTDYLPGEL IDSTEFVRRN AEIISQGGEP ATASTMLLGI TKASLTTDSF
LAAASFQETT RVLTEAAITG KVDYLRGLKE NVVIGKLIPA GTGIEKRRQL AEEVIGELAN
VVPTSTAVVE QERPEREADE ALRRRLRALI GSDDNGDEVG KNGEFADETP FTGDSDDRDN
EI
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