Gene Rcas_1580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1580 
Symbol 
ID5539056 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2029934 
End bp2030983 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content61% 
IMG OID640893718 
Producthistidine kinase 
Protein accessionYP_001431691 
Protein GI156741562 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCGC AGGACGGGCA AGAACGATCA GCGGCTCTCC GCGAAGCGCG TGACATTGTT 
GCAGAACAGT TGGAGCAGTT GCGCGCGCTG GCGGAACACG AGCGACAGGA GATAGCAACA
CTTGCAGCGG CACTGCGTCA GGCGGAGCGC GAACTCGATG AGGTGACCCT CCAGTATCGC
ACCGCAGTGC AGCGACGACG CTCAGGCGCC GAGTCGCTGA ACCGGCGGAT GACGGAACTG
CGAGAGCAGT GTGATGCCCT GAGCCGCGAC GTTGATGCGC GCCGCAGTGG TCTGCGGCAG
ATCGAACTGC TCATTCGCCA GATCGAGATG AGTAGCAGCG CGCTGAGCAA CACCGGAACA
GGAGCGACAT CAGACCCATG GGCGCTGGCG TTGCGTTCGC AGGTGATCCA TGGGCGCGAG
GAAGAGCGGA TGCGTCTGGC GCGCGAGGTC CACGACGGAC CGGCGCAAGT GCTTGCGAAC
TCGTTGATGT TGCTGGAGAC GTGTTATTCC CTGGCGCAGC AGCAAACCGG CGAGCACGCC
GAAAAACTGG CGGTGATGAT TGGTCGGCTG CGCGACGCCA CTCGTGAGGG GTTGAGCGAG
GTGCGTCGCT TCATTGCCAA TCTCCGACCG GGACAAGTCG CTGAACGTGG GTTGGTGGAG
GCGCTGCGTG AGTATCTGCG CGCCTATGGC AACACGTACA ATGTGCCCGT GGTGTTTGAG
GCTGATGCAG CGCCCCGACA GGCAGACGAA GTCGAGATCG TTCTCTACCG TATCGTCCAG
GAAGCGTTGC AAAATGCACA CAAATACGCA CGTGGATCGC CGATCACCGT GCGTCTGGCA
TATCGCTCAG ACACCATCAC CTTGTCGGTG CGCGATGAGG GTCCAGGATT TGATCCGCGC
GAAGTAGCGC GACGCGCCGG GAAGAGCAAT TGGGGATTGA CAAGCATGCG TGAGCGGGCT
GAGTTGATCG GCGCACGGCT GACCGTCGCA TCACGTCCAG GTTATGGCAC AGAAGTGACG
GTTGTGTTAC CACTGGAACA AACGGGGTGA
 
Protein sequence
MNSQDGQERS AALREARDIV AEQLEQLRAL AEHERQEIAT LAAALRQAER ELDEVTLQYR 
TAVQRRRSGA ESLNRRMTEL REQCDALSRD VDARRSGLRQ IELLIRQIEM SSSALSNTGT
GATSDPWALA LRSQVIHGRE EERMRLAREV HDGPAQVLAN SLMLLETCYS LAQQQTGEHA
EKLAVMIGRL RDATREGLSE VRRFIANLRP GQVAERGLVE ALREYLRAYG NTYNVPVVFE
ADAAPRQADE VEIVLYRIVQ EALQNAHKYA RGSPITVRLA YRSDTITLSV RDEGPGFDPR
EVARRAGKSN WGLTSMRERA ELIGARLTVA SRPGYGTEVT VVLPLEQTG