| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1578 |
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| Symbol | |
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| ID | 5539054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2027368 |
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| End bp | 2029155 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893716 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001431689 |
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| Protein GI | 156741560 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.259952 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAGCA GAATCTTCCC CGTGAGTAAT TCGCATCTAT CGCCAGTCCA TTCCACTCCT
GTGCTCCGGT TGCCGTTGCG CCGATTGTTT GGCGTCAGCA CATTTGTTGC AATTGCGTTG
CTGGGGGTGC TTGTCGCCTG TGGTGCGCCG GAACAACCTG CCACACCCGC GGGCGTCTCG
CCGATGCCTG CGCCAACCAC AGCGCCGCCG ACTGCGACAG CGCTGCCGCG CGGCGGCAAT
CTTACAATCC GGTTGGCTGC CGATGTTGCT GAGTTGCGCC CCTGGCATCC ACGTACACGT
GGCGAGGAAC AGCTCATCGC GCTGCTCTAC AGCGGTCTGA CCCGCCTGGA CGGCACGCTG
GCGCCGCAGC CGGATCTGGC GGCAGGCTGG ACGGCTTCTG CCGATGGGCG GACAATTACA
TTGACGTTGC GCCACGATGC GGTCTGGCAC GATGGACAGC CGGTGACGGC GGATGATGTG
GTCTTTACTC TCAACGAATT GCGCGCACTC GAACCAACCA CGGCGTTGCT CGCCGGGTTA
CGGCGTATGA CGGAGGTTAC AGCGCCGGCA ACCGATACCG TCGTGGTGCG TCTCGATGAA
CGCTACGCGC CGATCTTTAG CCTGTTGACG GCGCCGGTGT TGCCGCGCCA TGCCCTGAGC
GGCAGAAGTT TGGCGGATCT CAACGCCTGG GAAGCGCCGG TCGGCAGCGG TCCATTTCGC
CTGGAGCGGC GTGAGCCGGG CACGGCGATC ACGCTGGCGG CCAATCAATC GTTTTACCGG
GGCGCGCCGT TGCTCGACCG GGTGGTGTTC GTGGTGGCGC CCGATGCGCA GGTGGCGGCG
TCCGCGCTCC AGAATGGGCA GTTGCTCTTG GCGGAACTGC CCTGGAGCGA AGGGCGCGCG
CTCACCGAAA CAATGCCAAT GCTCCAAACC GGCGCATATG CCGAGAATGG CTACTACTTC
CTGGCATTCA ACCTGCGCCC CAACCGTATC TTCAGTGATC TGCGGCTGCG TGAGGCGCTG
GCGCTCACTA TCGATCTGCC GCGCATGATC CGGGAAGCGA CTAACGGGCA GGGCATGATC
ATCGGGAACA GCGCCGCTCC TGGCTCCTGG GCAGACCTGA CGCCGCCGTC AACGACGACC
GTGGACCTGG ATCGCGCGCG CGCGCTGCTC GATGAGGCAG GGTGGCGGCT CCCGTCGGAT
GGCGTGGTGC GGCAAAAAGA TGGTGTGACG CTCACCGCGC AACTCTTTGT GCGCGCTGAC
GATCCGCGTC GGGTGCGCGC TGCCGAACTG ATTGCTGGCG CCGCCGAGCA GATCGGGATG
GACATTGTGG TGCAACCCGC TGACTTCGCA ACGGTGATTC GCTCGAAGTA TGCGCCACCC
TATGATTTCG ACATGCTCCT CGGCAGCTGG ATCAATGGCG TCGCCGACCC GACTTTCGGT
GACTACGCCT ACTACGATCC AGACGATTTT GCGCTGTTTC ATTCGAGTCA GATCAACCAG
GGGGTGGCGG ATACGCGCCC TGTGTTGAAC TTTGTCGGGT TTAGCGACCC GGTGTACGAT
GATCAGGCAG GCGCAGCGCG GCAATTGTAC GATCTGACAG AACGGGCGCA GGCAATCCGG
CGGGCGCAGG AACGAGTGGC GCTGCTGCGT CCCTACCTGT TCCTGTGGAC GGATCGGTTG
CCGGTGGCAT GCAGCGCGCG CCTGACAACG CTGGACGGAC CGATTAACCT GGCGACGCCG
AACTATCTGT GGAATATCGA ACGGTGGTAT GTCACAGGTG AGGGTTGA
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| Protein sequence | MSSRIFPVSN SHLSPVHSTP VLRLPLRRLF GVSTFVAIAL LGVLVACGAP EQPATPAGVS
PMPAPTTAPP TATALPRGGN LTIRLAADVA ELRPWHPRTR GEEQLIALLY SGLTRLDGTL
APQPDLAAGW TASADGRTIT LTLRHDAVWH DGQPVTADDV VFTLNELRAL EPTTALLAGL
RRMTEVTAPA TDTVVVRLDE RYAPIFSLLT APVLPRHALS GRSLADLNAW EAPVGSGPFR
LERREPGTAI TLAANQSFYR GAPLLDRVVF VVAPDAQVAA SALQNGQLLL AELPWSEGRA
LTETMPMLQT GAYAENGYYF LAFNLRPNRI FSDLRLREAL ALTIDLPRMI REATNGQGMI
IGNSAAPGSW ADLTPPSTTT VDLDRARALL DEAGWRLPSD GVVRQKDGVT LTAQLFVRAD
DPRRVRAAEL IAGAAEQIGM DIVVQPADFA TVIRSKYAPP YDFDMLLGSW INGVADPTFG
DYAYYDPDDF ALFHSSQINQ GVADTRPVLN FVGFSDPVYD DQAGAARQLY DLTERAQAIR
RAQERVALLR PYLFLWTDRL PVACSARLTT LDGPINLATP NYLWNIERWY VTGEG
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