| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1572 |
|---|
| Symbol | |
|---|
| ID | 5539048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2021006 |
|---|
| End bp | 2021758 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640893710 |
|---|
| Product | electron transport protein SCO1/SenC |
|---|
| Protein accession | YP_001431683 |
|---|
| Protein GI | 156741554 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.304694 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTCTT CATCGTCACA AGTTGGCGCC ACGTCGCTAT CGAGAAGCGT GCGTCCGGTT
GAGAGTTCTC GTCCGGCGTC CGTATTCTGG GTCAGGCGCG CCCTCTACGG CGTGGCTGCG
CTCTTTGCCG CTCTGGTTCT CCTCATCCTC TGGTTCGCCA TTGCCCGTCC AGTTCAGGTA
TTGCCACGGA TTGGCCAGGC GCCCGCCTTT ATGTTGACCG ATCAGGATGG TCGCTGGATA
AGTGATGCCG ATCTGCGCGG GAGGGTGTTG ATCATCAATT TTGCGCATAC GCGCTGTGGC
GAACGATGTG CGGCGATGGA ACGTAGCCTG CTGACCCTTG TGGACGCCCT GCGCGCGGAT
GGTCGGCTGG GAACGCAGGT GCGCCTGGTG ACCATCAGCG TGGATGCCGA TGGCGACACT
CCGCCCGCCC TGCGCGCCTA TGCTGAACGC ATGAACGTCG CAGCGCCGGA GGAATGGATC
TTCTTAACCG GTTCTGCCCG TGAACTCAAG CAATTGATCG GCGGCGGGTA CGGCGTGTAC
TATCGGATGA ACGGGGAGAC TGTCGATCTC GTCGATCAGC GCGCTGTTCT GGTCGATGAA
ACCGGGTTGC TGCGCGCCGA GTACGACGGT ACACGTCTTG ATCCCGCGAT CGTGTTACGT
GACATCGGGT TAGTCGAACA GGAGGCGAAC AGCAGCGCAA CTGCGCGCCC GATCTACGAA
GCGGCGCATA TCTTCGTCTG TTATCCGAGG TGA
|
|---|
| Protein sequence | MRSSSSQVGA TSLSRSVRPV ESSRPASVFW VRRALYGVAA LFAALVLLIL WFAIARPVQV
LPRIGQAPAF MLTDQDGRWI SDADLRGRVL IINFAHTRCG ERCAAMERSL LTLVDALRAD
GRLGTQVRLV TISVDADGDT PPALRAYAER MNVAAPEEWI FLTGSARELK QLIGGGYGVY
YRMNGETVDL VDQRAVLVDE TGLLRAEYDG TRLDPAIVLR DIGLVEQEAN SSATARPIYE
AAHIFVCYPR
|
|---|
| |