| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1567 |
|---|
| Symbol | |
|---|
| ID | 5539043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2011958 |
|---|
| End bp | 2013151 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640893705 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001431678 |
|---|
| Protein GI | 156741549 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCTG TTTCCGCGCC CGCCCTGGGT AACCTGTACG CTGCGCGGGC GAAGAATCTC
GCCCCGGCTC AAATCTGGCC CGAACACGAG GGCGATCTGA TCTCGCTGGC ATACGGTTTT
GCTGCGCCGG AACTGTTCCC AACTGACGAT CTCCTCTCCG CCACTGCCGA AGTGTTGGCG
GAGGATGCGG CGGAAGGGTT GAACTACGCG CCAACCTACC CCGGTCTGGT GCAGTTCGTT
GCGAATCGCC TGCGCGCTCA GGGAACCCCG GCTGAACCGG GCACTGTGCT GATTTCCTAC
GGTTCCAGCC AGGTGCTGGC GTTGCTGCCG CAGGTGTTCA TCGATCCCGG CGATGCCGTG
ATCGTCGAAG GACCGACGTT TATGGGTGCG GTGCGCCATT TTGCGCTGGC AGGCGCGCGC
CTGATCACCG TCGATGTCGA TGAGTACGGC ATGAATGTTG ATGCTCTTGA AGAGACGTTG
CGCGATCTGG CGCAGCGCGG TCAACGCCCC AAGTTCATCT ATACGATCCC GACCTTTCAT
AATCCGAGCG GCGTGCTGAT GCCGCTGGAG CGCCGACAGC GACTGGTGGC GCTGGCGAAG
GAGTATGGGG TGCTGATCGT TGAAGACGAC GCCTACGGCG ATCTCTACTT CGAGAACCCG
CCGCCGCCGC GTCTCTCTGC GCTCGACCAT GAAGGGTGGG TGTTGCAGGT CGGCACCTTC
TCGAAAATCC TGGCGCCGGG GTTGCGTATG GGGTGGGCAT GCGGCAATCA CGAGATCATT
CAGCGCCTGG CAAGTTTCAA GGTCGAAGGG TCGAGTGGTC CCTTCCTGAC GCGCATGGTC
GAGCGGTGCT GCGCCGATGG CCGCCTGGAG CGGCATATCG CCGAACTGCG CGCGGCGTAT
CGGGCGCGAC GCGACCTGAT GCTGACAGTG ATTGCGCGTG AATGGACTCC GGAGGTGCGC
GTCACAAAAC CTGAGGGTGG GTTCTTTATC TGGGCGCGGT TGCCGCAGGG TGTGAGCGCA
ACCGCGTTGC TCGCCGAAGC GGAGAAGCAT GGGGTGACGT TTTCGCCAGG AACGCATTTC
TATGCAAACG GTCAGGGAGA TGATGCGTTC CGCCTGTCGT TCAGTTTTGT TCCGCATCAG
CAGATCGAGG ATGGCATCGC GCGCATCGGT GCTGCATTGC GGATGTTCCA GTAA
|
|---|
| Protein sequence | MSAVSAPALG NLYAARAKNL APAQIWPEHE GDLISLAYGF AAPELFPTDD LLSATAEVLA
EDAAEGLNYA PTYPGLVQFV ANRLRAQGTP AEPGTVLISY GSSQVLALLP QVFIDPGDAV
IVEGPTFMGA VRHFALAGAR LITVDVDEYG MNVDALEETL RDLAQRGQRP KFIYTIPTFH
NPSGVLMPLE RRQRLVALAK EYGVLIVEDD AYGDLYFENP PPPRLSALDH EGWVLQVGTF
SKILAPGLRM GWACGNHEII QRLASFKVEG SSGPFLTRMV ERCCADGRLE RHIAELRAAY
RARRDLMLTV IAREWTPEVR VTKPEGGFFI WARLPQGVSA TALLAEAEKH GVTFSPGTHF
YANGQGDDAF RLSFSFVPHQ QIEDGIARIG AALRMFQ
|
|---|
| |