Gene Rcas_1556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1556 
Symbol 
ID5539032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1997675 
End bp1998217 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content58% 
IMG OID640893694 
Productacetolactate synthase, small subunit 
Protein accessionYP_001431667 
Protein GI156741538 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0440] Acetolactate synthase, small (regulatory) subunit 
TIGRFAM ID[TIGR00119] acetolactate synthase, small subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC ATACTATCGT CGCGCTCGTG CAGGACCGCC CCGGCGTGCT GAGCCGGGTG 
GTCGGACTCA TTCGACGACG CGGCTTCAAC ATCGAAAGTC TGGCAGTCGG ACATAGCGAA
ACTCCCGGCA TCAGCCGGAT GACAATCGTT GTGGAGTGGG AGGATGTCGA GCAGGTGGTC
AAGCAACTCT ACCGCCTGAT CGAGGTGCTG AAGGTCAGCG ACGTGACCAA CGATCCGACG
GTCGAACGCG AAATGGCGTT GATGAAACTG CATGCGCCTC CGGCGAAGCG CCCTGAGATT
GTGGCCCTCA CCGAAGTCTT CGACGCTAAA ATTGTTGATG TCGGCGCAAA TACGATGGTG
ATCGAGATGA CCGGGTCGCC ATCCAAGGTG CAGAACTTTA TCGACGTGAT TCGCCCTTAT
GGCATCAGAG AAATGATGCG CACCGGGCGG ATTGCGATGG TGCGCGGCGC GCGCGGTCAT
ACCGCCGAGG AGTATGTCGA AAGCGCCAAC GGACACGCCG AGCGCGTGCC GGCGATGAAT
TAA
 
Protein sequence
MKKHTIVALV QDRPGVLSRV VGLIRRRGFN IESLAVGHSE TPGISRMTIV VEWEDVEQVV 
KQLYRLIEVL KVSDVTNDPT VEREMALMKL HAPPAKRPEI VALTEVFDAK IVDVGANTMV
IEMTGSPSKV QNFIDVIRPY GIREMMRTGR IAMVRGARGH TAEEYVESAN GHAERVPAMN