| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1553 |
|---|
| Symbol | |
|---|
| ID | 5539029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1993618 |
|---|
| End bp | 1995288 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640893691 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_001431664 |
|---|
| Protein GI | 156741535 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.491054 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGACC ATGTACGCAT CTTCGACACC ACGCTGCGCG ACGGTGAACA GGCGCCGGGC
TGCACCATGA CGCTGGAGGA AAAACTGGAG GTCGCGCGGC AACTGGCACG TTTGGGGGTA
GACATTATCG AGGCCGGTTT CCCGGCAGCG TCACCCGGCG ACTGGGCAGC CGTTCACGAG
ATCGCCAAAA CCGTTGGGAC GCCCGATGGT CCGATTATCG CAGCGCTGGC GCGCGCCAAC
AAGGACGATA TTGACAAAGC CTGGAGCGCC ATTCAGCCAG CCGCGAAAAA ACGCATCCAC
ACCTTCATTT CCTCATCCGA CATTCATATC GAACATCAAC TGCGCTCGAC CCGCGAAGAA
GTGCTCGAGC GCGCCCGCCT GATGGTGCGC TATGCGCGCT CACTGTGCGA CGATGTTGAG
TTTTCGCCAA TGGACGCGAC CCGCTCCGAC CCGGAGTATG TCTACCGCAT GCTGGCGGCG
GTCGTTGCAG AAGGCGCCAC CACGCTCAAC ATTCCCGATA CGGTCGGCTA CGCCACACCC
GAAGAGTATG CCGAACTGAT CGCCGGCATC TACCGCCACG TCCCCGGCGC CGATAAGGTC
ATTATTTCCA CCCACTGCCA CGACGACCTG GGCATGGCGG TGGCAAACTC GCTGGCCGGC
GTGCGCGCCG GCGCGCGCCA GATCGAGTGC ACCATCAACG GTATCGGTGA GCGCGCCGGA
AATGCCTCGC TCGAGGAAGT CGTGATGGCG CTGAAAACCC GCCGCTCGTT CTTTGGCGTC
GATACGCGGA TCAACACCCG CGAACTGGCG CGCAGCAGTC GGCTGCTCAG CACCATTATC
GGTATGCCGG TGCCACCGAA CAAGGCGATT GTCGGCGCCA ATGCCTTCGC CCACGAGTCC
GGCATCCACC AGGATGGCGT CCTGAAGCAT CGCATGACGT ATGAAATCAT GGACGCAACG
ACCATCGGTT TGGACGGCAA TGCCATCGTG CTCGGCAAGC ACTCCGGGCG CAATGCGCTG
CGCACCAAAC TGGCAGCGAT GGGGTATGAG TTCGACAGCG AGGAAGAGTT CAATCAGGTC
TTCCAGCGCT TCAAAGAACT GTGCGACAAG AAGAAAGTCG TCGACGACCG CGACCTGGAG
GTGCTGGCGA CCGGCGGATC GCTCCATACC CCGGAGTTGT ACCGCCTGGA GCATGTGCAG
GTCACCTGCG GCACCGGCGT CACGCCGGTG GCGACCGTGC GCATTACCGA TCCGGACGGC
AATACGCAGA CGACTGCCGC ACACGGCACC GGACCGGTCG ATGCGATCTA CAAAGCCATC
GATAAGATCG TCGGGCGACC AAACGACCTG ATCGAATTCT CGATCAAGGC GGTCACTGAG
GGGATCGACG CAGTTGCTGA AGTTTCTGTG CGCATCCGCG AGCCGGGCGA TGCGGTTGAG
GAGCGCGAGT ACCGTGTCGG GCGGCACCGC GGACCGCAGA TCTACAGCGG TTACAGCGCC
AATACGGATA CCATCGTTGC CGCTGCCGAG TCGTATATGG CGGCGCTCAA TAAGATGATC
GCCGCGCGCC AGGAGCGCCT GAGCGCCGAA AATGTCGCCT ACGCCGCCGG ATACGACCGC
AACAGGCCAA CCTATGCGGT CGATCTATTT GGCAAGAATG CGACGGAGTA A
|
|---|
| Protein sequence | MEDHVRIFDT TLRDGEQAPG CTMTLEEKLE VARQLARLGV DIIEAGFPAA SPGDWAAVHE
IAKTVGTPDG PIIAALARAN KDDIDKAWSA IQPAAKKRIH TFISSSDIHI EHQLRSTREE
VLERARLMVR YARSLCDDVE FSPMDATRSD PEYVYRMLAA VVAEGATTLN IPDTVGYATP
EEYAELIAGI YRHVPGADKV IISTHCHDDL GMAVANSLAG VRAGARQIEC TINGIGERAG
NASLEEVVMA LKTRRSFFGV DTRINTRELA RSSRLLSTII GMPVPPNKAI VGANAFAHES
GIHQDGVLKH RMTYEIMDAT TIGLDGNAIV LGKHSGRNAL RTKLAAMGYE FDSEEEFNQV
FQRFKELCDK KKVVDDRDLE VLATGGSLHT PELYRLEHVQ VTCGTGVTPV ATVRITDPDG
NTQTTAAHGT GPVDAIYKAI DKIVGRPNDL IEFSIKAVTE GIDAVAEVSV RIREPGDAVE
EREYRVGRHR GPQIYSGYSA NTDTIVAAAE SYMAALNKMI AARQERLSAE NVAYAAGYDR
NRPTYAVDLF GKNATE
|
|---|
| |