| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1551 |
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| Symbol | |
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| ID | 5539027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1990917 |
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| End bp | 1992527 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893689 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_001431662 |
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| Protein GI | 156741533 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0164478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.383881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATTC TGCTCTACGA TACGACTCTC CGCGACGGAA CGCAGCGCGA AGGGTTATCG
CTTTCCGTCG AAGACAAACT GAAGATCGCG CGCGAACTCG ACCTGCTCGG CGTTCACTAC
ATCGAAGGCG GATGGCCCGG CTCGAATCCC AAAGATGCCG AGTTCTTTCA GCGCATCCGC
CGTGCCGACC TGCGCCACGC GAGAGTCGCC GCCTTCGGCA GCACCCGCCG CGCCGACGCC
ACCTGTGATA CCGACGCCAA TATCCAGGCG CTTGTTGCTG CCGAGACGCC GGTGGTAACG
CTCGTCGGCA AGAGTTCGAC CCTGCATGTC GAGCAGGTGC TCGAAACGAC ACGCCAGGAG
AATCTGGCAA TGATCGCCGA AAGCGTCGCA TATTTCAAGG AGCGCGGTAA GGAGGTCGTC
TACGACGCGG AGCACTTCTT CGACGGCTAT AAACTGGATG CCGCGTATGC GCTGGCAACC
CTGACCGCAG CCGCGCACGC CGGCGCCGAC TGCCTGGTGC TGTGCGATAC GAATGGCGGC
AGCCTGCCGC ACGAAGTGAC CGAAATCGTG CAGGCGGTGC AGCGCCGCCT GGCAAACGAA
GGGTTTAGCA ACGGCGCAGC AGGGCGTGGT CCTACCCTCG GCATCCACAC CCACAACGAC
GGCGCGCTGG CAGTCGCCAA CGCGCTTGCC GCCGTGCGCG CAGGATGCGT CCACGTCCAG
GGCACGATCA ACGGCTATGG CGAACGGTGC GGCAATATGG ACCTGATCCC GCTCATCGCT
AATCTGCAAC TGAAACTCGG CTACCGCTGC ATTACCCCCG AACAACTTCG CCGCCTGACC
GAGGTGTCGC ACTATGTCGC CGCCGTCGCC AACCTCAACC CCGACACCCA CGCGCCATTC
GTTGGACACT CCGCATTCGC GCACAAAGGT GGCATCCACG TTGCCGCCGT CGCCAAAGTG
CCGGACAGTT ACCAGCACAT CGACCCGGAA CTGGTCGGCA ATCGGATGCG GGTGGTCGTC
AGTGAACTGT CGGGGCGCGG GAATGTGCGG ATGCGCGCGC AGGAACTGGG GCTTGATCTG
AACGGGAACG AACGGGTGGT ATTGCAACGG ATCAAAGAGC TGGAAAACCG TGGCTTCCAG
TTCGAGGCGG CGGAGGGATC GTTCGAGATG CTGGTGCGCC GCGCTGCGCC CGACTACGAA
CCGCCGTTCG AGTTGCTCGA TTTCACGGTG GTCGTCAGCA AACATGGCGC TGGCGACATA
ATCTCGCAGG CAATGGTCAA GCTCAAAGTC GGCAACGAGG TTATGCACAC CGCAGCCGAA
GGCGACGGAC CGGTCAATGC GCTCGATAAG GCAATCCGCA AGGCGCTGCT GCCACACTAC
CCCGAACTCG CCGATGTGCA ACTGGTCGAC TACAAGGTGC GCATCGTCGA TGAACACCTC
GGCACCGCCG CCAGACCGCG CGTGCTGATC GAATCGGCGC GCGGCGAAGA ACGCTGGAGC
ACGGTCGGCT GCTCGGAAAA TATTATTGAA GCCAGTTTTA TGGCGCTGTG GGACAGCCTG
GAACTCCCGC TGGCGCGACG GCGGGCTTCG TGCAATGCGC ACCGTTCCTG A
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| Protein sequence | MQILLYDTTL RDGTQREGLS LSVEDKLKIA RELDLLGVHY IEGGWPGSNP KDAEFFQRIR
RADLRHARVA AFGSTRRADA TCDTDANIQA LVAAETPVVT LVGKSSTLHV EQVLETTRQE
NLAMIAESVA YFKERGKEVV YDAEHFFDGY KLDAAYALAT LTAAAHAGAD CLVLCDTNGG
SLPHEVTEIV QAVQRRLANE GFSNGAAGRG PTLGIHTHND GALAVANALA AVRAGCVHVQ
GTINGYGERC GNMDLIPLIA NLQLKLGYRC ITPEQLRRLT EVSHYVAAVA NLNPDTHAPF
VGHSAFAHKG GIHVAAVAKV PDSYQHIDPE LVGNRMRVVV SELSGRGNVR MRAQELGLDL
NGNERVVLQR IKELENRGFQ FEAAEGSFEM LVRRAAPDYE PPFELLDFTV VVSKHGAGDI
ISQAMVKLKV GNEVMHTAAE GDGPVNALDK AIRKALLPHY PELADVQLVD YKVRIVDEHL
GTAARPRVLI ESARGEERWS TVGCSENIIE ASFMALWDSL ELPLARRRAS CNAHRS
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