| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1506 |
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| Symbol | |
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| ID | 5538982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1922446 |
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| End bp | 1924830 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893645 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001431618 |
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| Protein GI | 156741489 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.176969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.629284 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGATG AGACACCGCT CAGCGTGTTA TTGGTTGCTC AGAGTGATGA AGTTGCAGGC
AGGCTCCGCG TTGCATTCGG CGATCTGGCG ATCACGCTCG ATCATGTGTC TCCCGATCAG
GCGTTATCCA CATTGTCGGT TACTCGTGTT GATGTGGTGC TGCTCGATGT CAGTCCTTTC
CCCGATGTTC CGCTGGAACT GATCGCCTCC ATTGTGACCG TTGCGCCACA TGTGCCGATC
CTCGCGCTGG TGGTCAACGA TGCCGATCCG CGCGCATTAG CCGCGCTGGC AGCCGGCGCG
CACGATTTTG TCAGTTCTGA GGCAGCGGCC AGTGCAATAG TTGCGCGTTT GCGCAGTGCG
GCAGCGCACC GCCTGGCAGA GAAGGGCGAT CAGCCGGTCG CTCTGAAGGA CCTGGTGTTG
CGCAGCAACG ATGCCGTGCT CCTGATCGGT CGCGATGGGC GGGTCAATCA GGCGAACGCC
GCTGCTGCCG CGCTGTTTGG CGTGCTGACC GAACGCCTGA TCGGTGAACC GTTTGGCACG
CCAATCGTCT CGAATCTGGC GACGACGATT GATATTCCAC GACGGAACGA CGAGCCGATT
GCAGCGGAGC TGTTTTTGCT CCATGTGCTC GATGATCGAT CTGATGATGC GTACCTGGCG
ATCTTACGTG GCATATCTCG CCACCACCGC CTCGATGTCG ATCTGCGATT GATGATGGCT
GCTATTTCCA GCACCAGTGA CGGCATCGTC ATTGCCGATC TCGACGGGGT GCCGCATTAC
CAGAATCCCG CGTTTCAAAA AATGACCGGC TTGACGCTCG ATGATCTGCG GATGGCGGGT
GGTCTGTTGC GTTTGTATCG CGATGTCGGC ACTGCGCGTG CAGCGCTGAG CGCAGTGCGC
AGCGGGCAGT CCTATCGGGG GGAAATGCGC CTGATCGATC GCCAGGGCGC GGCAATCAGC
GTCCTGTTGC ATATCGACCC GGTGCTGGAT GCGTCGAACC AGGTCATCGC GCTGGTGGCC
GTCCATACCG ATGTGACGCA GCGCAAGTTG ACCGAAGATC GCCTGGCATA CCTGTCGTCG
CACGATCCAC TGACCGGTCT GGCAAATCGA ACCTTGCTGC TCGACCGGTT GCAACTGGCA
TTGGAGCGAC GCAACCGTCA CGGAGCGGCG CTGTGCGGTA TCTTGCTGCT CGACCTGGAT
CGGTTCAAGC AGATCAATGA TAGCCTCGGT CATATGGTCG GTGATGAAGT GCTGATCGCC
GTCGCTGGTC GCCTGAAGCA TATCACCCGT CCTGGCGACA CGGTCGCGCG TCTTGGCGGC
GATGAATTCG CCGTGGTTCT CGATTCGGTC GGCTCTCTGG ACGATATCTG GCGGATTGCG
CTGCGCATCC AGCAAGCGCT GAGCCATCCG ATCACGGTGC AGGATCAGTC GTTGATGGTT
GGCGTCAGTC TGGGGATTGC GATTGATGAT GGGCGCACGA CCAGTGCAGC CGCACTGTTG
CGTGATGCCG ATACGGCGCT GCATCAGGCG AAGGCGCGCG GGCGATCCCG AATCGTGCTG
TTCGAGGAGG CGATGCATAC GGCAGCGACA ACGCAACTGC AACTCGAAAT CGAGTTGCGT
CAGGCGTTGC ATCGGCAGGC GTTGCTGCTG CACTATCAGC CAATCGTTGA TCTCGCCAGC
GGAGCGATCC GGGGATTTGA GGCGCTCATG CGCTGGCATC GTCCGCTCAG CGGGCTGGTG
CTGCCCGACG GTTTTTTGCC GGTTGCCGAG GAAGCGGGTA TGATCCCGGC GATGGGCGCC
TGGAGTATTG TCGAAGTCTG CCGTCAGGCG CGGCGCTGGC GCGATCAGTT CGGCAGCGCC
GCCGAACTTC CTGTCAGTGT CAATATTCAT AGTCGGCAGC TCGAACAGAC GGAACTGCCG
CATCAGGTGC GGCAGGCGCT ACGTGAGTTC AACTTGCCTG GCGCGGCGCT GACCATCGAA
ATCACCGAGA AAGCGACGCT GCGCGATCTC GATCTGGTGG TGACACAGTT GCAGCAACTC
AAGGAGTTGG GGGTGCAGGT GGTGTTGGAC GATTTTGGCA CCGGGTACTC ATCGCTCGGT
CACCTGGCGC GCCTGCCGAT TAATGGTGTC AAAATTGATC GGTCGTTCGT CCAGTCGATG
ATGCATGATC CACTTTCTAT TACAATTGTG CGTGCTGTGA TCACGCTTGC CCGTGAGTTG
AACCTGGGAG TGGTGGCAGA AGGTGTCGAA ACGGAAGAAC AACGCGCGGC GCTGTTGCAG
CTTGGATGCA CCTGTGCGCA GGGGTGGCTG TTCGGTCGGG CGGTCGATGC GGAAGCGGCG
GCGGAATGGA TAGCGCGCCG CAGAGAGTTG AGCATTGAGA AGTGA
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| Protein sequence | MKDETPLSVL LVAQSDEVAG RLRVAFGDLA ITLDHVSPDQ ALSTLSVTRV DVVLLDVSPF
PDVPLELIAS IVTVAPHVPI LALVVNDADP RALAALAAGA HDFVSSEAAA SAIVARLRSA
AAHRLAEKGD QPVALKDLVL RSNDAVLLIG RDGRVNQANA AAAALFGVLT ERLIGEPFGT
PIVSNLATTI DIPRRNDEPI AAELFLLHVL DDRSDDAYLA ILRGISRHHR LDVDLRLMMA
AISSTSDGIV IADLDGVPHY QNPAFQKMTG LTLDDLRMAG GLLRLYRDVG TARAALSAVR
SGQSYRGEMR LIDRQGAAIS VLLHIDPVLD ASNQVIALVA VHTDVTQRKL TEDRLAYLSS
HDPLTGLANR TLLLDRLQLA LERRNRHGAA LCGILLLDLD RFKQINDSLG HMVGDEVLIA
VAGRLKHITR PGDTVARLGG DEFAVVLDSV GSLDDIWRIA LRIQQALSHP ITVQDQSLMV
GVSLGIAIDD GRTTSAAALL RDADTALHQA KARGRSRIVL FEEAMHTAAT TQLQLEIELR
QALHRQALLL HYQPIVDLAS GAIRGFEALM RWHRPLSGLV LPDGFLPVAE EAGMIPAMGA
WSIVEVCRQA RRWRDQFGSA AELPVSVNIH SRQLEQTELP HQVRQALREF NLPGAALTIE
ITEKATLRDL DLVVTQLQQL KELGVQVVLD DFGTGYSSLG HLARLPINGV KIDRSFVQSM
MHDPLSITIV RAVITLAREL NLGVVAEGVE TEEQRAALLQ LGCTCAQGWL FGRAVDAEAA
AEWIARRREL SIEK
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