Gene Rcas_1486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1486 
Symbol 
ID5538961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1899225 
End bp1900889 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content62% 
IMG OID640893624 
ProductFAD dependent oxidoreductase 
Protein accessionYP_001431598 
Protein GI156741469 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID[TIGR02734] phytoene desaturase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.975068 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCAAA AATACGACTA CGATGCCATC ATCGTTGGCG GCGGGCACAA CGGGCTGGCA 
TGTGCCGGGT ACCTTCAGCG CGCCGGATTG CGCACCCTGG TGCTCGAACG TCGCCCGATC
GTTGGCGGTG CGGTCTGCAC CGAAGAGGTG ATCCCCGGTT ACCGGATCGA TGTCGGGTCG
TCGGCGCATA TTATGATCCA CCTGACCCCG GTGATCCGCG ATCTTGAACT CGAACGGTAT
GGTCTCGAAT ACTGTGACAT GGATCCGTAT GCGTTCTATC CCATTCCTGA CGGCTCTGGC
GCAATTGCGC TCTACCGTGA TGTCGATAAA ACCTGCGAGT CGATCGCGCG TGTGTCGCCG
CGCGATGCCG AAGCATACCG CCGCTTTCTC GCGTTCTGGC GTCCGATCAA TGAGGCGGTG
TTCGAGACGT TTCTCAACCC GCCGACGGTG ACCGGGCTGT TCGGCAGCAT GATCAAGGCG
CAACTGAAAA CCGGACGATG GGGCGATACG CTCGAAACGG TGCGTCGCCT GTTCACGTCC
TATGGGCAAC TGATCGTCGA GCAATTTGAA AGTGAACCGA TGCGCGCATT TATGGCATGG
CTCGGCGCGC AGTCTGGTCC GCCACCGGAC GAAATTGGCT CTGGCGACCA TTTTGGCTGG
TATGCGATGA TGCATCTCAG CGGTGCGAAG CATCCGAAGG GGGGGAGCGG CATGCTCACG
CAGGCAATGG CGCGCTCCCT GACGGCATCT GGCGGCGAGG TGCGTCTCGA TGCGCCGGTG
AAGCGCATTC TGGTGCAGAA CGGTCGGGTG CAGGGGGTCG AGTTGCAGCG CGGTGATCGC
ATCAGCGCGC CGCTGGTGGT ATCGAATGCC CATGTGGTCA CCACCATGCT CGATCTGGTC
GGCGCCGATC ATCTGCCGCC GGGGCTGGCG GAGCGGGTGC GGAACATTCG CATCGGCAAT
GGGTTTGGTA TGACGGTGCG CTGTGCTGCC GAAGAACTGC CCGACTATCC GGGTGCGCCA
TCGGGCGGCA AGCCGCACTG GAGCCACCAC GGGTTGCAGA TGCTCTGCCC GTCGCTTCAG
TACCTGCGCA ACGCCTTCGC CGATTATCAA CGCGGGTTGC CGTCGCGTGA GCCGGCGGTC
ATCAGTATGA CCTTCTCCGC TATCGATCCA ACCGTTGCGC CGAAGGGGAA GCATACGGTC
TTTCTCTGGG CGCAGTACTT TCCCTACGAA CTTGCCGATG GTCGCCACTG GGACGACATT
CGCGAAGAGG TTGCCGACAG CATTCTTGAC GTGCTCTACC GCCATGCGCC GAATATGCGC
GGCAAGATTA TCGACCGTTT CATTCAGTCG CCGCTCGATA TTGAGCGACG TCTGGGGCTG
TTGCGCGGGA ATGTCATGCA CGTCGAGATG TCGTTCGATC AGATGTTCTT TTTCCGTCCA
CTGCCGGAAC TGGCGCAGTA TCGCACGCCA ATCCGCGGTT TGTATCTTAC CGGCGCGAGC
ACCCACCCCG GCGGCGGCGT CTTTGCTGCG AGTGGCTACA ATACCGCGCG CACGGTCCTT
CGCGATCTCC GGCGCGAACG AATGGTGTGG GCTGGCGCCG CGCTTGCCGC CGGAAGCGTC
GGTTGGTGGG CAGCGCGACG GCGGCGCTCG ACGGCGCAGG TGTGA
 
Protein sequence
MPQKYDYDAI IVGGGHNGLA CAGYLQRAGL RTLVLERRPI VGGAVCTEEV IPGYRIDVGS 
SAHIMIHLTP VIRDLELERY GLEYCDMDPY AFYPIPDGSG AIALYRDVDK TCESIARVSP
RDAEAYRRFL AFWRPINEAV FETFLNPPTV TGLFGSMIKA QLKTGRWGDT LETVRRLFTS
YGQLIVEQFE SEPMRAFMAW LGAQSGPPPD EIGSGDHFGW YAMMHLSGAK HPKGGSGMLT
QAMARSLTAS GGEVRLDAPV KRILVQNGRV QGVELQRGDR ISAPLVVSNA HVVTTMLDLV
GADHLPPGLA ERVRNIRIGN GFGMTVRCAA EELPDYPGAP SGGKPHWSHH GLQMLCPSLQ
YLRNAFADYQ RGLPSREPAV ISMTFSAIDP TVAPKGKHTV FLWAQYFPYE LADGRHWDDI
REEVADSILD VLYRHAPNMR GKIIDRFIQS PLDIERRLGL LRGNVMHVEM SFDQMFFFRP
LPELAQYRTP IRGLYLTGAS THPGGGVFAA SGYNTARTVL RDLRRERMVW AGAALAAGSV
GWWAARRRRS TAQV