Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1486 |
Symbol | |
ID | 5538961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1899225 |
End bp | 1900889 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640893624 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_001431598 |
Protein GI | 156741469 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.975068 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCAAA AATACGACTA CGATGCCATC ATCGTTGGCG GCGGGCACAA CGGGCTGGCA TGTGCCGGGT ACCTTCAGCG CGCCGGATTG CGCACCCTGG TGCTCGAACG TCGCCCGATC GTTGGCGGTG CGGTCTGCAC CGAAGAGGTG ATCCCCGGTT ACCGGATCGA TGTCGGGTCG TCGGCGCATA TTATGATCCA CCTGACCCCG GTGATCCGCG ATCTTGAACT CGAACGGTAT GGTCTCGAAT ACTGTGACAT GGATCCGTAT GCGTTCTATC CCATTCCTGA CGGCTCTGGC GCAATTGCGC TCTACCGTGA TGTCGATAAA ACCTGCGAGT CGATCGCGCG TGTGTCGCCG CGCGATGCCG AAGCATACCG CCGCTTTCTC GCGTTCTGGC GTCCGATCAA TGAGGCGGTG TTCGAGACGT TTCTCAACCC GCCGACGGTG ACCGGGCTGT TCGGCAGCAT GATCAAGGCG CAACTGAAAA CCGGACGATG GGGCGATACG CTCGAAACGG TGCGTCGCCT GTTCACGTCC TATGGGCAAC TGATCGTCGA GCAATTTGAA AGTGAACCGA TGCGCGCATT TATGGCATGG CTCGGCGCGC AGTCTGGTCC GCCACCGGAC GAAATTGGCT CTGGCGACCA TTTTGGCTGG TATGCGATGA TGCATCTCAG CGGTGCGAAG CATCCGAAGG GGGGGAGCGG CATGCTCACG CAGGCAATGG CGCGCTCCCT GACGGCATCT GGCGGCGAGG TGCGTCTCGA TGCGCCGGTG AAGCGCATTC TGGTGCAGAA CGGTCGGGTG CAGGGGGTCG AGTTGCAGCG CGGTGATCGC ATCAGCGCGC CGCTGGTGGT ATCGAATGCC CATGTGGTCA CCACCATGCT CGATCTGGTC GGCGCCGATC ATCTGCCGCC GGGGCTGGCG GAGCGGGTGC GGAACATTCG CATCGGCAAT GGGTTTGGTA TGACGGTGCG CTGTGCTGCC GAAGAACTGC CCGACTATCC GGGTGCGCCA TCGGGCGGCA AGCCGCACTG GAGCCACCAC GGGTTGCAGA TGCTCTGCCC GTCGCTTCAG TACCTGCGCA ACGCCTTCGC CGATTATCAA CGCGGGTTGC CGTCGCGTGA GCCGGCGGTC ATCAGTATGA CCTTCTCCGC TATCGATCCA ACCGTTGCGC CGAAGGGGAA GCATACGGTC TTTCTCTGGG CGCAGTACTT TCCCTACGAA CTTGCCGATG GTCGCCACTG GGACGACATT CGCGAAGAGG TTGCCGACAG CATTCTTGAC GTGCTCTACC GCCATGCGCC GAATATGCGC GGCAAGATTA TCGACCGTTT CATTCAGTCG CCGCTCGATA TTGAGCGACG TCTGGGGCTG TTGCGCGGGA ATGTCATGCA CGTCGAGATG TCGTTCGATC AGATGTTCTT TTTCCGTCCA CTGCCGGAAC TGGCGCAGTA TCGCACGCCA ATCCGCGGTT TGTATCTTAC CGGCGCGAGC ACCCACCCCG GCGGCGGCGT CTTTGCTGCG AGTGGCTACA ATACCGCGCG CACGGTCCTT CGCGATCTCC GGCGCGAACG AATGGTGTGG GCTGGCGCCG CGCTTGCCGC CGGAAGCGTC GGTTGGTGGG CAGCGCGACG GCGGCGCTCG ACGGCGCAGG TGTGA
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Protein sequence | MPQKYDYDAI IVGGGHNGLA CAGYLQRAGL RTLVLERRPI VGGAVCTEEV IPGYRIDVGS SAHIMIHLTP VIRDLELERY GLEYCDMDPY AFYPIPDGSG AIALYRDVDK TCESIARVSP RDAEAYRRFL AFWRPINEAV FETFLNPPTV TGLFGSMIKA QLKTGRWGDT LETVRRLFTS YGQLIVEQFE SEPMRAFMAW LGAQSGPPPD EIGSGDHFGW YAMMHLSGAK HPKGGSGMLT QAMARSLTAS GGEVRLDAPV KRILVQNGRV QGVELQRGDR ISAPLVVSNA HVVTTMLDLV GADHLPPGLA ERVRNIRIGN GFGMTVRCAA EELPDYPGAP SGGKPHWSHH GLQMLCPSLQ YLRNAFADYQ RGLPSREPAV ISMTFSAIDP TVAPKGKHTV FLWAQYFPYE LADGRHWDDI REEVADSILD VLYRHAPNMR GKIIDRFIQS PLDIERRLGL LRGNVMHVEM SFDQMFFFRP LPELAQYRTP IRGLYLTGAS THPGGGVFAA SGYNTARTVL RDLRRERMVW AGAALAAGSV GWWAARRRRS TAQV
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