| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1485 |
|---|
| Symbol | |
|---|
| ID | 5538960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1897926 |
|---|
| End bp | 1899029 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640893623 |
|---|
| Product | anti-sigma-factor antagonist |
|---|
| Protein accession | YP_001431597 |
|---|
| Protein GI | 156741468 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGAC CATCTGCCCT ACGACTCGCC GCTTGCGCGC CGTCAGGCGC TTGTGTTGCA
GAGAATGCTC CTCTTCATTG TCGGCGGCGC TCTTGCAGGC ATGGGACTCA GCCCAATCTC
CAATCTGACC ACCGCGAGTC TGACATTTTC GCTAACGTTA TACGGCATGG TGCGCTCGGC
GCGCTGGCCG GACTGGCGCT GTTGCGGCGC GGCGCTTTTC GCGCTGCGGG GGCGACCATC
GTTGCCACCC TGGTGCTCAC GCTCAGCCTG GCGATGGCTG CCTACGGAGA GCAACACATC
GAGTATACCC TGCCGGGTCT GGTGGCGCCC ATCGTGCTGG CAGGATTGGT CATTGGGCGT
CGCGCGCTCT GGATTGCATG CGGCGCCGCG ATTGTCAGCA TAGCGCTGAA CACACTGGGG
GAAGTCTATC TGCCGCAATG GTTCGGAAGC ATCTCCACGC CAGATCCCGG TCCCATTGCC
TTTATCGCGG GATACACCCT TGTGGTGGTT GTCATCAGCC TGTTCCTCGA CCGGTTCGGC
AGCGCGTTGC GCGAGGCGCT CAATCAAGCG CACGAGCGCG AGCGGGAACT CGAAGCATTG
CGCGCCTCGC TGGAACAGCA GGTGGCGGAA CGCACCGCTT CGCTCCAGCA GACGATCAAC
GAGTTGCGCA CGTCTCAGGA AACCGTGCGC GCGCTCAGCG CGCCGGCGCT GCCGGTGCTT
CCCGGCGTAT TGGTGCTGCC GCTGATTGGC GCTTTCGACT CGCGCCGCAT TGCGGACTTG
AACAGGGTTG CGCTCAATGC CGTCGATCAA CGCCGCGCAA AGGTGGTGAT CTTCGATGTG
ACCGGCATTG CCCTACTCGA CACCTCTACA GCGCAGGCGC TCTTGCAGAC GGCGGCAGCC
GTGCGATTGC TCGGCGCCGA GTCCTGGCTG GTCGGTCTGC GCGCCGAAGT AACGCAGACA
ATCGTGATGC TTGGCGTCGA TCTGCGTGCG TTTCGCGCGT TTGCCAGTCT TGAAGATGCG
ATTGGCGCGC TTGTCCGAAA CAATAATCAA CGCACCGCGC CCGCGATACG CGGTGCAAGG
GTGTGGAATG GCATGGGCGA CTGA
|
|---|
| Protein sequence | MARPSALRLA ACAPSGACVA ENAPLHCRRR SCRHGTQPNL QSDHRESDIF ANVIRHGALG
ALAGLALLRR GAFRAAGATI VATLVLTLSL AMAAYGEQHI EYTLPGLVAP IVLAGLVIGR
RALWIACGAA IVSIALNTLG EVYLPQWFGS ISTPDPGPIA FIAGYTLVVV VISLFLDRFG
SALREALNQA HERERELEAL RASLEQQVAE RTASLQQTIN ELRTSQETVR ALSAPALPVL
PGVLVLPLIG AFDSRRIADL NRVALNAVDQ RRAKVVIFDV TGIALLDTST AQALLQTAAA
VRLLGAESWL VGLRAEVTQT IVMLGVDLRA FRAFASLEDA IGALVRNNNQ RTAPAIRGAR
VWNGMGD
|
|---|
| |