| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1478 |
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| Symbol | |
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| ID | 5538953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1887478 |
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| End bp | 1891218 |
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| Gene Length | 3741 bp |
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| Protein Length | 1246 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640893616 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001431590 |
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| Protein GI | 156741461 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.313815 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAA CGACTATTCT TTCAATGACC GCGCTCCTCA ATGAGATTAC GTCGCTTGCG
CCGGTTCAGG AACTGATGGC GACGCTCCGT TCATGCGCTG GCGCGCGCCT GCACATTGCG
CCCGCGCCGG GAGCCGCGCG CACGCCATTG GTTGCTGCCG TCGCTGTCAA TGCTGCTGCG
CCGATGGTGT ATGTCGTGAG CACGACCGAT GCAGCATTGC GCGCGTATGA CGATCTGCGC
CAGTGGCTTG GCGATGATCG GGTGGTGATC TTTCCGGCGG GTGATGCACT GCCGTATGAG
CATATGTCTA CCGGCAGCGA TGTTCTTGCA GCGCGTATGC GCGTTTTGCG TCGCCTGGCT
GCGTTCGTTG CCGCCGATGG TATGCCGTCG GTGATCGTTG CTCCGGTCAA GGCGTTGATG
CAGCCAACGC TGACGCCGGA TGAACTGCGC ACCGGCAGTA TTCGCCTGGA GCGAGGCGTC
CCATGCCTTC TGGACGATCT CATGGAACGG CTGATCGATC TGGGGTACCG CTATGCGCCA
ACGGTCGAAG AGCCAGGGGA GGTCAATCGG CGTGGCGGCA TTATCGACGT GTTTCCGCCG
GGAGACGATC TGCCGCTGCG GATTGAGTTC TTTGGCGATG AAATCGATAG CCTCCGCCGT
TTCGATCCGT TGACGCAGCG CAGTGAGGCG CAGATCAGCG CCGCGATCAT TGATCCACCG
CACGAGTTTC CGTTATGGCA GCGCGCGGCG GCCCTGGAGC GCATGCGCAA CATTGATACA
TCGACGTTGC GGCGTGAGGC GCTCGATGAG TGGTTGCGGG CCTTCGAGCA TATCCAGCGC
GGTGAGCGGT TCGAGGGGCG TGCGCTCTTT GCGCCGTTCT TCCGTGACGC GATGGATGCG
CCTGCGACGT TGCTGCGCCA TCTGCCGTCG GGCGCTATCG TGGCGCTTAA CGATGCCTTG
CTTCTGGCGC AGCATGCCGC AGAACTCGAT CATCAGGCAG AAACGCGCCG CCGCCAGCAG
ATCGATGCTG GCGAACTTCC AGCAGCGTTT CCGCGTCCCT ATCTGCGCTG GCACGAACTC
ATCGCACAGG CGGAATCGTT GACGCTGGCG GATTTCAGCA ATAACGAGCG ACCGATCTGG
GACGCGCTCC TCCCTGATCC TGTACTGTCC GATGCGTTTC AGCAGGGCAA CGGCGCCGAG
CCGACGATCC CGCGCCCGGC GCCGGATTCG TCGGATGCAC GGTTTCGCCT GCATCTTCTG
CCGGAACGCC TGTTTTTGCC TGCCGATCTG TTTGGTGGGC AGATTCGGCG TCTGGTTGAG
GATATTGTCG AACGACTGCA TGCTGGCGAG CGGGTCATCG TTGTGACGCC GCAGGCGGCG
CGCTTGCAGG AGTTGGTCGC GGAAGGGATG CAGCGCGATA TTGAACCGGC AGTCGATCCA
TCGCTGTTTA CTGCTATCCA TGGCTCGCTC GACGCCGGGT TCCGTCTGCC CGCGTTGCGC
CTGACCCTCT TCAGCGACAG TGAAATCTTT GGTTGGCGGC AGCGCCGGAT TGTAACCGGG
AAGCAACGGC GACGCGAACG GAGCGTCGAA GATCGCGCAG CGTTCCTGCG CGGTCTGAAA
CCAGGCGACT ATGTGGTCCA TATCGAGCAC GGCATTGCCG TCTATGAAGG ATTGGTGCGG
CGCAGCGTCG GCGGCGTCGC GCGCGACTAT CTGAACCTGC GGTATGCTGA AGGCGACCGG
CTCTACGTTC CGGTCGATCA GATCGACCGC GTTTCGCGGT ATATCGGCGC CGGTGATGCC
GAACCGCAGT TGACTCGCCT TGGCACGCAG GATTGGGAGC GCGCGAAACG CAAAGCGCGC
GCCGCAGTGC AGGACCTGGC GGACGAGTTG ATCGGTCTCT ATGCGCAGCG CCAGCTGGCA
GAGGGGCATG CATTCAGCCC GGATACCGAG TGGCAACGTG AACTCGAAGC CAGTTTTCCA
TACGTCGAAA CCCCCGATCA ACTCAAAGCG ATCATCGATG TCAAGCGCGA TATGGAACAG
CCGCAGCCAA TGGATCGCCT GATCTGCGGT GATGTCGGGT TTGGCAAGAC GGAAGTGGCG
CTGCGGGCGG CGTTCAAAGC TGTGCAGGAC GGCAAACAGG TGGCGGTGCT GGCGCCAACG
ACGGTGCTGG TTCAGCAGCA CTACGATACC TTCAGCCGGC GCATGGCAGC GTTTCCTGTC
CGGGTCGAGA TGATTTCGCG CTTTCGTTCG GCAAAGGAAC AGAGTGACAT CGTGCGACGG
CTGGCGCGTG GCGAGATCGA TGTGATCATC GGCACCCATC GCCTGCTCTC GAAGGATGTG
GTCTTCAAAG ATCTCGGATT GCTGGTGGTC GATGAAGAGC AGCGGTTTGG CGTGCGCCAT
AAAGAACGCA TCAAGCAATT GCGTACAAAT GTGGACGTTA TCACCCTGAC AGCAACTCCG
ATTCCGCGGA CGCTCCATAT GGCGCTGGCA GGAATTCGTG ATCTGAGCGT GATCGACACG
CCGCCTGAGG ATCGCATTCC GATCAAAACC TATGTCCTTC CATACGACGA GAACCTGATC
CGCGAAGCCA TCCTGCGCGA ACTTGATCGT GGCGGTCAGG TCTACTTCGT TCACAATCGG
GTGCAGAGCA TTTACTACGT CGCCGACCGG CTGCGCCAGT TAGTGCCGGA AGCCAGAATC
GCGGTTGGTC ACGGGCAACT CGACGAACGC CAGTTAGAGC GGGTGATGCT CGACTTCTTC
ACCGGTAGGG ATGATGTGTT GGTCTGTACC ACGATCATCG AGAGCGGGCT GGATGTTCCA
AATGCCAACA CGATCATTAT CGACGATGCA ACGCACTTCG GGCTGGCGCA GTTGTACCAG
TTGCGCGGAC GGGTGGGGCG CGGCACGCAG CGCGCCTATG CCTACCTCTT CTATCGGTCG
GAACGTCCTT CGACGCCGGA GGCGCAGGAG CGACTTCAGG CGATCCAGGA GGCGACTGAA
CTTGGCGCCG GGTTCCGCAT CGCTATGCGC GATCTCGAAA TTCGAGGCGC GGGGAATCTG
CTCGGCGCCG AGCAGAGCGG GCACATCGCC GCCGTGGGGT TCGATCTCTA CTCACGGCTG
CTCGAACAGG CTGTGCGCAC ATTGAAGCAG CGGTTGATTG CGACCAACCT GATCACCGGC
GCCGACGTAT TGCGCGCGAC CCCGACGACA GAGACGACTG CGCCGACCCC GCTGCGACCA
TCGCCGGCGC CCAGGCAACC GCCGGTCAGG GTCGATGAGA AGGTGCTGAT TTCGCCGCTG
GTCACCCTCG ATCTTCCGCT CGACGCTTAT CTGCCCGTCG ATTATATTCC TGATGACCAG
GTGCGGCTGG CGGCATACCA GCGCATGGCG GAGGCGCAGA CGCCAGAAGC AGTGCATGAT
CTGCGCCAGG AATTGCGGGA TCGCTTCGGT GAACTTCCGG AACCGGCGGA ACAGTTACTC
ATCTGGTTGC GGATCAAAGC GCTTGCACTG GCGGCAGGCG TGACGTCGGT GGTCACGACC
GATGAGGAGT TCATTGTGCG GCTGCCGGAA GGCGCCAACA GACAGCGGAC GCGGTTGGAA
CGTCGTTTTG CTCGCACCAG GGGCATTCGC ATCGGTCCGC AGTTCGTGCG CATCGACCGG
CGGGTTTATA ACGTGGGGGG CGACCCGGCG TGGATCGAGG TGATGTGCGA GGTGTTGGGG
GTGTTGGGGG TGAAGGATTG A
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| Protein sequence | MTTTTILSMT ALLNEITSLA PVQELMATLR SCAGARLHIA PAPGAARTPL VAAVAVNAAA
PMVYVVSTTD AALRAYDDLR QWLGDDRVVI FPAGDALPYE HMSTGSDVLA ARMRVLRRLA
AFVAADGMPS VIVAPVKALM QPTLTPDELR TGSIRLERGV PCLLDDLMER LIDLGYRYAP
TVEEPGEVNR RGGIIDVFPP GDDLPLRIEF FGDEIDSLRR FDPLTQRSEA QISAAIIDPP
HEFPLWQRAA ALERMRNIDT STLRREALDE WLRAFEHIQR GERFEGRALF APFFRDAMDA
PATLLRHLPS GAIVALNDAL LLAQHAAELD HQAETRRRQQ IDAGELPAAF PRPYLRWHEL
IAQAESLTLA DFSNNERPIW DALLPDPVLS DAFQQGNGAE PTIPRPAPDS SDARFRLHLL
PERLFLPADL FGGQIRRLVE DIVERLHAGE RVIVVTPQAA RLQELVAEGM QRDIEPAVDP
SLFTAIHGSL DAGFRLPALR LTLFSDSEIF GWRQRRIVTG KQRRRERSVE DRAAFLRGLK
PGDYVVHIEH GIAVYEGLVR RSVGGVARDY LNLRYAEGDR LYVPVDQIDR VSRYIGAGDA
EPQLTRLGTQ DWERAKRKAR AAVQDLADEL IGLYAQRQLA EGHAFSPDTE WQRELEASFP
YVETPDQLKA IIDVKRDMEQ PQPMDRLICG DVGFGKTEVA LRAAFKAVQD GKQVAVLAPT
TVLVQQHYDT FSRRMAAFPV RVEMISRFRS AKEQSDIVRR LARGEIDVII GTHRLLSKDV
VFKDLGLLVV DEEQRFGVRH KERIKQLRTN VDVITLTATP IPRTLHMALA GIRDLSVIDT
PPEDRIPIKT YVLPYDENLI REAILRELDR GGQVYFVHNR VQSIYYVADR LRQLVPEARI
AVGHGQLDER QLERVMLDFF TGRDDVLVCT TIIESGLDVP NANTIIIDDA THFGLAQLYQ
LRGRVGRGTQ RAYAYLFYRS ERPSTPEAQE RLQAIQEATE LGAGFRIAMR DLEIRGAGNL
LGAEQSGHIA AVGFDLYSRL LEQAVRTLKQ RLIATNLITG ADVLRATPTT ETTAPTPLRP
SPAPRQPPVR VDEKVLISPL VTLDLPLDAY LPVDYIPDDQ VRLAAYQRMA EAQTPEAVHD
LRQELRDRFG ELPEPAEQLL IWLRIKALAL AAGVTSVVTT DEEFIVRLPE GANRQRTRLE
RRFARTRGIR IGPQFVRIDR RVYNVGGDPA WIEVMCEVLG VLGVKD
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