| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1474 |
|---|
| Symbol | |
|---|
| ID | 5538949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1882751 |
|---|
| End bp | 1883647 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640893612 |
|---|
| Product | methylthioadenosine phosphorylase |
|---|
| Protein accession | YP_001431586 |
|---|
| Protein GI | 156741457 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0005] Purine nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR01694] 5'-deoxy-5'-methylthioadenosine phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.244682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.157223 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAC TGCAACAGAC GGAACCGCGC GCAACAATTG GCGTCATTGG CGGGAGTGGC
CTGTATGCGA TGGAAGGTCT CGCCGATGTT GAGCGTGTGA CGTTGCAGAC CCCGTTCGGC
GCACCAAGCG ACGCCTATGT GATCGGCACA ATCGAAGGGT ATCGCGTCGC CTTTCTGCCA
CGCCATGGCG TTGGTCATCG CCTCTCACCG AGTGAAGTCC CGAGTCGCGC CAATATGTAC
GGCTTTCGCA TGCTTGGCGT GCGCTACCTG ATTGCGGTCA GCGCCGTCGG CAGCTTGCGC
GAAGAGTACG CTCCCGGGCA CATCGTCATT CCTGACCAGT TGTACGACCG TACCAAAGGG
CATCGCCCCG ATACCTTCTT CGGCGGCGGG TTGGTGGCGC ACGTGCAGTT CGACCGCCCG
TTTGACGCCG GGTTGTCCGA TCGCCTGGAA CAGGCGGCGC GCGCCGCCGG CGCAACCGTG
CATCGCGGCG GCACACTGGT GGTCATGGAA GGTCCACAGT TCAGCACGCT TGCGGAAAGT
GAAGAAAACC GGCGCCGTGG ACACCACCTG ATCGGTATGA CGGCGCTTCC CGAAGCCAAA
CTGGCGCGCG AGGCGGAGAT CGCTTACGCA ATGCTGGCAA TGGTAACTGA CTACGATTGC
TGGCATCCGG GGCACGACGC CGTCACCGTC GAGATGGTCG TTCAGGTCCT CCAGGCAAAC
GCGCGGCTGG CACAGGATGT CGTGCGGCGC GTTATCCCGC TGATCGGCGA TGGCTTCGAC
AGCCCGGCGC ACCATGCACT GGCGACCGCC ATCATCACCG ACCCTGCCGT CATCCCTGCC
GAAAAACTCG CGCAGGTTGA ACTCCTGGTC GGAAAATACC TGCGCAAAGA AGCATAG
|
|---|
| Protein sequence | MTALQQTEPR ATIGVIGGSG LYAMEGLADV ERVTLQTPFG APSDAYVIGT IEGYRVAFLP
RHGVGHRLSP SEVPSRANMY GFRMLGVRYL IAVSAVGSLR EEYAPGHIVI PDQLYDRTKG
HRPDTFFGGG LVAHVQFDRP FDAGLSDRLE QAARAAGATV HRGGTLVVME GPQFSTLAES
EENRRRGHHL IGMTALPEAK LAREAEIAYA MLAMVTDYDC WHPGHDAVTV EMVVQVLQAN
ARLAQDVVRR VIPLIGDGFD SPAHHALATA IITDPAVIPA EKLAQVELLV GKYLRKEA
|
|---|
| |