| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1456 |
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| Symbol | |
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| ID | 5538930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1858927 |
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| End bp | 1860138 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893594 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001431569 |
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| Protein GI | 156741440 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.242829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCA GGACGCCAAC CGTTTCAAAA TCCGCCGAGG CGCTGCCGCC GCCAACCGAA
CGATACAGCG TCGTTCGCTG GATGCACAAG AACCTGTTCA GCACCTGGTA CAATACGCTG
CTCACAATCA TAATGCTGGC GCTGACGGCG TTTCTTGTGC GCGGCATACT GGAGTGGGCG
CTCACACAGG CGCGCTGGGA GGTCATTAGC GCCAACCTGC GCCTGTTTCT GGTCGGGCAG
TACCCGGTGA CAGCGCTCTG GCGCATCTGG GCATGCGTGG CGTTGCTGGC ATTCCTGATC
GGCATGTCGT GGGGCATTTG GGGCAGGACG CAGCGCGGTG GAGCGATAGC GTTCGGTGCG
TTGCCCTTCA TTCTGGCGAT CACGACCTCT GATGAGACAT CGCGTGTCGC GCTGCTGATC
ACCGGCATCG CGGGCGTCGT CGGGTATACG CTGAGTTGGC GCTGGAGCGG CGCGTTGCGG
CGGGTCAGTA TCATTGGCTG GATTCTCTAC TTCCCCATCC TCTTTGTGCT GGTCAGCGGG
TTTGGCGCTG CTGATAGCGT CCTACCGCCT GTGCCGACCA ACCTTTGGGG CGGGTTGCTG
CTCACGCTGC TGCTGACGGT CGTTGGGATT GTGCTCTCTT TCCCGCTCGG CGTTCTACTG
GCGTTGGGGC GGCAGTCGAA ATTGCCGGTG ATTCACTGGC TCTGCGTCAT CTACATCGAA
CTGATCCGCG GTGTGCCGTT CATCAGTGTG CTGTTCATGG CGCAACTGAT GCTCCCGTTG
TTCCTGCCGG GCGTGACGAT TGATCGGGTG GTGCGCGCGA TGGCAGGGGT GATTATTTTC
AGCGCCGCCT ACCTGGCCGA GAATGTGCGC GGCGGCTTGC AGTCGATCCC GCGTGGTCAG
TATGAAGCGG CACGCGCATT GGGTTTGAGC GCCTGGAAGA TGACGCTGCT GATCATCCTG
CCGCAGGCGC TCAGAGCCGT GATCCCGATT CTCGTGGGGC AGTTCATCGC GTTGTTCAAG
GACACCTCGC TGGTGGTGAT CGTCGGTCTG CTTGATCTTA TGGGCATTGC CAGAACCGTT
CTGGCGCAGC CCGACTTTCT GGGATTACAG GCGGAAGTCT ACACCTTCGT TGCATTCGTC
TATGGCGTCT TCTGCTATCT GATGTCGGCG TTCAGCCAGC GATTGGAAGC ACAACTGCAC
ACAGGACGTT AA
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| Protein sequence | MSARTPTVSK SAEALPPPTE RYSVVRWMHK NLFSTWYNTL LTIIMLALTA FLVRGILEWA
LTQARWEVIS ANLRLFLVGQ YPVTALWRIW ACVALLAFLI GMSWGIWGRT QRGGAIAFGA
LPFILAITTS DETSRVALLI TGIAGVVGYT LSWRWSGALR RVSIIGWILY FPILFVLVSG
FGAADSVLPP VPTNLWGGLL LTLLLTVVGI VLSFPLGVLL ALGRQSKLPV IHWLCVIYIE
LIRGVPFISV LFMAQLMLPL FLPGVTIDRV VRAMAGVIIF SAAYLAENVR GGLQSIPRGQ
YEAARALGLS AWKMTLLIIL PQALRAVIPI LVGQFIALFK DTSLVVIVGL LDLMGIARTV
LAQPDFLGLQ AEVYTFVAFV YGVFCYLMSA FSQRLEAQLH TGR
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