| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1455 |
|---|
| Symbol | |
|---|
| ID | 5538929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1857734 |
|---|
| End bp | 1858924 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640893593 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001431568 |
|---|
| Protein GI | 156741439 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.376971 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGC CTCCGCGCCC AACATCGCCG CTGCGATTGA GCCGCGCCTT CTGGCGCGAT
GAACGGTTCA TCCAGATCGC CATCCAGATC CTTTTTCTGG CGCTGGTGAT CTGGGTTGGT
TCCGTGGCGC TGCGCAATAT GTTGACGTCG CTCCGTCAGC AGGGGCTGGC GCTGGGATTC
GATTTTCTCA ATAGCGGCGC AGGGTTCGAC ATCAGCGATG CGCTGATTGC GTATAGCAGC
AGCGATACCT TTGCGCGCGC GCTCCAGGTC GGGTTACTTA ACACGGTTGT GGTCAGCCTG
CTGGGTATTG TGCTGGCTAC GCTGCTGGGT ATTGTGGTGG GTGTTGCGCG CCTCTCAAGC
AACTGGCTCG TCAATCGTAT GGCGTGGGTG TTTGTGGAGA TCATGCGCAA TGTGCCGCTG
TTGGTGCTGC TCGTCTTTAT CTACACCGCC TTCTTTCTGA AACTGCCCCG CGCCCGTCAG
GCGGTGAATA TCGGTCCCGT CTATCTGAGC AATCGCGGGG TGGCTGTTCC CTGGGGCGAA
CCAACCGATA CGTGGTCCCT CTATATGTCC GTTCTGGTCG GTGCGCTGAT TGCGGGTGCG
CTGGTCGGGT TTGCCATGCA CCGGTGGCAG GAACAGAGCG GTCGCCCGCG TCCGTTGGTC
TGGTTCTCGT TGCTGACCAT AGCGGTGATT GCGATGGTTG GATGGGTCGC GTTGCCGCAA
CCGCCGTTGA TCCTCTCGTA CCCGGAAATT GCCGGGTTCA ACTTTCAAGG CGGGCGGGTG
TTGTCGCCGG AATTTATGGC GCTGCTGATC GGTCTTGTTC TTTATACGGC AGGATTCATC
GGCGAAGTGG TGCGCGCCGG TATTCAGGCT GTGCCCAAAG GTCAGGTCGA GGCGGCGCGC
GCGCTGGGAC TTACACCGTC ACGCACGCTG CGGTTGGTTG TCTTTCCGCA GGCGCTGCGC
CTGATCATTC CGCCGATTAC CAACCAGTAC CTGAACCTGA CCAAGAACTC GACACTGGCG
GTCGCTATCG GGTATCCCGA TCTGTTTGCG GTCTCCGGCA CGATTATCAA TCAGACCGGG
CGCGCCGTTG AGATGATCGC TGTGGTGATG GCGGTCTACC TGATCTTAAG CCTGCTGACA
TCGCTGATCA TGAACTGGTA CAACCGTCGT GTCCGTCTGG TGGAGCGTTG A
|
|---|
| Protein sequence | MEAPPRPTSP LRLSRAFWRD ERFIQIAIQI LFLALVIWVG SVALRNMLTS LRQQGLALGF
DFLNSGAGFD ISDALIAYSS SDTFARALQV GLLNTVVVSL LGIVLATLLG IVVGVARLSS
NWLVNRMAWV FVEIMRNVPL LVLLVFIYTA FFLKLPRARQ AVNIGPVYLS NRGVAVPWGE
PTDTWSLYMS VLVGALIAGA LVGFAMHRWQ EQSGRPRPLV WFSLLTIAVI AMVGWVALPQ
PPLILSYPEI AGFNFQGGRV LSPEFMALLI GLVLYTAGFI GEVVRAGIQA VPKGQVEAAR
ALGLTPSRTL RLVVFPQALR LIIPPITNQY LNLTKNSTLA VAIGYPDLFA VSGTIINQTG
RAVEMIAVVM AVYLILSLLT SLIMNWYNRR VRLVER
|
|---|
| |