| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1454 |
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| Symbol | |
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| ID | 5538928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1856216 |
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| End bp | 1857385 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893592 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001431567 |
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| Protein GI | 156741438 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.758875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCG TGCTCGGATG GCTGATCGTC ATTCCGCTCC TGCTGGCTGC GTGTGGTCAA
CCGGCAGCCC AGACGGGGCA ACCGGTGGAA GTGACCCGCA TCGTCGAAGT GACTCGCGTT
GTCGAAGTGA CGCCGGTTGG CGGCGGCGCG CCTGCACAAC CGGCAGCGAC TCCCGCGCCT
GCTCCGGCGT CTGCCGCTCC TGCTGGTTTC GGTGAGACGC TCAAGGCGAT TCAGGCGCGC
GGCAAACTGA TCTGCGGCGT CAACAGCCAG GTTCCCGGTT TTGGGTTCGT CGATCCGACA
GGCGCTTTCA GCGGTTTCGA TATCGATTAC TGCAAGGCGC TGGCAGCAGC CATTTTCAAT
GATGTCAGCA AGATCGAATA TCGTCCACTG ACTGCGGAGC AGCGCTTTGC CGCCTTGCAG
AGCGGCGAGA TCGATGTGCT CATCCGCAAC ACGACCTGGA CGCTCACCCG TGATACCGAC
AACGGCGGCA ATTTCGTCGC CACGACGTTC TACGACGGTC AGGGTATTAT GGTCCCGAAA
GCCTCGAATA TTACGAAGCT CGAAGACTTG AACGGCGCGA CGATCTGTGT GCAGAAGGGC
ACGACGACCG AGTTGAACCT GGCGGACCAG ATGAACGCGC GTAACCTGGC GTATACCCCC
GCAACGTTCG AGGACGCCAA CAGCACCTTC GCCGCCTACG CCGAGGAGCG TTGCGATGCC
GTGACGACCG ATAAGTCCGG TCTCGTGTCG CGCCGCTCAG TGCTGCCCAA CCCCGATGAT
CACGTCATCC TCGATGTGAC GCTGTCGAAG GAGCCGCTTG GTCCGATGGT GCGCCAGGGC
GACGACCAGT GGTTCGACAT TGTGCAGTGG GCGGTATTTG CCACGTTTGC CGCTGAAGAG
TTCGGTATCA CATCGCAAAA TGTGGATCAA CTCAAAGAAA CCGATACCCG TCCCGAAGTT
CGGCGCTTGC TTGGCGCTGA TCCAAATGTG GACCTCGGTG CGAAGCTGGG CTTGAGTAAG
GATTGGGCTG CCAATGTCAT CAAAGCGGTC GGCAATTATG GCGAGATCTA CGACCGCAAT
CTCGGCCCGA ATACGAAGAC TGCCATTCCA CGTGGCATCA ACAATCTTTA CACTCAGGGC
GGATTGCTCT ACGCGCCGCC GTTCCGGTAA
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| Protein sequence | MKRVLGWLIV IPLLLAACGQ PAAQTGQPVE VTRIVEVTRV VEVTPVGGGA PAQPAATPAP
APASAAPAGF GETLKAIQAR GKLICGVNSQ VPGFGFVDPT GAFSGFDIDY CKALAAAIFN
DVSKIEYRPL TAEQRFAALQ SGEIDVLIRN TTWTLTRDTD NGGNFVATTF YDGQGIMVPK
ASNITKLEDL NGATICVQKG TTTELNLADQ MNARNLAYTP ATFEDANSTF AAYAEERCDA
VTTDKSGLVS RRSVLPNPDD HVILDVTLSK EPLGPMVRQG DDQWFDIVQW AVFATFAAEE
FGITSQNVDQ LKETDTRPEV RRLLGADPNV DLGAKLGLSK DWAANVIKAV GNYGEIYDRN
LGPNTKTAIP RGINNLYTQG GLLYAPPFR
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